ShortListing Model: A Streamlined SimplexDiffusion for Discrete Variable Generation

  • Yuxuan Song ,
  • Zhe Zhang ,
  • Yu Pei ,
  • Jingjing Gong ,
  • Qiying Yu ,
  • Zheng Zhang ,
  • Mingxuan Wang ,
  • Hao Zhou ,
  • Jingjing Liu ,
  • Wei-Ying Ma

NeurIPS 2025 |

Publication | Publication

Generative modeling of discrete variables is challenging yet crucial for applications in natural language processing and biological sequence design. We introduce the Shortlisting Model (SLM), a novel simplex-based diffusion model inspired by progressive candidate pruning. SLM operates on simplex centroids, reducing generation complexity and enhancing scalability. Additionally, SLM incorporates a flexible implementation of classifier-free guidance, enhancing unconditional generation performance. Extensive experiments on DNA promoter and enhancer design, protein design, character-level and large-vocabulary language modeling demonstrate the competitive performance and strong potential of SLM. Our code can be found at https://github.com/GenSI-THUAIR/SLM