The DNA Data Storage Model
Dave Landsman, Karin Strauss
IEEE Computer | June 2023, Vol 56(7): pp. 78-85
Karin Strauss
Senior Principal Research Manager, Microsoft Research AI4Science
Publications
Publications by Year
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Spatially Selective Electrochemical Cleavage of a Polymerase-Nucleotide Conjugate
Jake Smith, Bichlien Nguyen, Rob Carlson, Jeffrey G. Bertram, Sebastian Palluk, Daniel H. Arlow, Karin Strauss
ACS Synthetic Biology | May 2023
DNA storage in thermoresponsive microcapsules for repeated random multiplexed data access
Bas W. A. Bögels, Bichlien Nguyen, David Ward, Levena Gascoigne, David P. Schrijver, Anna-Maria Makri Pistikou, Alex Joesaar, Shuo Yang, Ilja K. Voets, Willem J. M. Mulder, Andrew Phillips, Stephen Mann, Georg Seelig, Karin Strauss, Yuan-Jyue Chen, Tom F. A. de Greef
Nature Nanotechnology | May 2023
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Information decay and enzymatic information recovery for DNA data storage
Linda C. Meiser, Andreas L. Gimpel, Tejas Deshpande, Gabriela Libort, Weida D. Chen, Reinhard Heckel, Bichlien Nguyen, Karin Strauss, Wendelin J. Stark, Robert N. Grass
Communications Biology | October 2022
Biobased materials for sustainable printed circuit boards
Oladele A Ogunseitan , Julie M Schoenung, Johnny Lincoln, Bichlien Nguyen, Karin Strauss, Kali Frost, Eric Schwartz, Haoyang He, Maryam Ibrahim
Nature Reviews Materials | September 2022
Preserving DNA in Biodegradable Organosilica Encapsulates
Julian Koch, Ann-Christin Kerl, Natascha Schawalder, Anne M. Luescher, Bichlien Nguyen, Karin Strauss, Wendelin J. Stark, Robert N. Grass
Langmuir | September 2022
A Tale of Two Mice: Sustainable Electronic Design and Prototyping
Vicente Arroyos, Maria L K Viitaniemi, Nicholas Keehn, Vaidehi Oruganti, Winston Saunders, Karin Strauss, Vikram Iyer, Bichlien Nguyen
CHI 2022 | April 2022
Integrating DNA Encapsulates and Digital Microfluidics for Automated Data Storage in DNA
Philipp L. Antkowiak, Julian Koch, Bichlien Nguyen, Wendelin J. Stark, Karin Strauss, Luis Ceze, Robert N. Grass
Small | February 2022
A Combinatorial PCR Method for Efficient, Selective Oligo Retrieval from Complex Oligo Pools
Claris Winston, Lee Organick, David Ward, Luis Ceze, Karin Strauss, Yuan-Jyue Chen
ACS Synthetic Biology | February 2022
Anhydrous calcium phosphate crystals stabilize DNA for dry storage
Philipp L. Antkowiak , Julian Koch, Przemyslaw Rzepka, Bichlien Nguyen, Karin Strauss, Wendelin Jan Stark, Robert N. Grass
Chemical Communications | February 2022
Synthetic DNA applications in information technology
Linda C. Meiser, Bichlien Nguyen, Yuan-Jyue Chen, Jeff Nivala, Karin Strauss, Luis Ceze, Robert N. Grass
Nature Communications | January 2022
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Scaling DNA data storage with nanoscale electrode wells
Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss
Science Advances | November 2021
Robust Digital Molecular Design of Binarized Neural Networks
Johannes Linder, Yuan-Jyue Chen, David Wong, Georg Seelig, Luis Ceze, Karin Strauss
Leibniz International Proceedings in Informatics (LIPIcs) | September 2021, Vol 205(DNA 27)
Molecular-level similarity search brings computing to DNA data storage
Callista Bee, Yuan-Jyue Chen, Melissa Queen, David Ward, Xiaomeng Liu, Lee Organick, Georg Seelig, Karin Strauss, Luis Ceze
Nature Communications | August 2021, Vol 12(4764)
An Empirical Comparison of Preservation Methods for Synthetic DNA Data Storage
Lee Organick, Bichlien Nguyen, Rachel McAmis, Weida D. Chen, A. Xavier Kohll, Siena Dumas Ang, Robert Grass, Luis Ceze, Karin Strauss
Small Methods | January 2021
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Rapid and robust assembly and decoding of molecular tags with DNA-based nanopore signatures
Kathryn Doroschak, Karen Zhang, Melissa Queen, Aishwarya Mandyam, Karin Strauss, Luis Ceze, Jeff Nivalla
Nature Communications | November 2020, Vol 11(5454)
Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA
Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss
Electronics Goes Green 2020 | September 2020
PurpleDrop: A Digital Microfluidics-based Platform for Hybrid Molecular-Electronics Applications
Ashley Stephenson, Max Willsey, Jeff McBride, Sharon Newman, Bichlien Nguyen, Christopher N Takahashi, Karin Strauss, Luis Ceze
IEEE Micro | September 2020, Vol 40(5): pp. 76-86
Quantifying Molecular Bias in DNA Data Storage
Yuan-Jyue Chen, Christopher N. Takahashi, Lee Organick, Callista Bee, Siena Dumas Ang, Patrick Weiss, Bill Peck, Georg Seelig, Luis Ceze, Karin Strauss
Nature Communications | June 2020, Vol 11(3264)
Content-Based Similarity Search in Large-Scale DNA Data Storage Systems
Callista Bee, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze
May 2020
Using Strand Displacing Polymerase To Program Chemical Reaction Networks
Shalin Shah, Jasmine Wee, Tianqi Song, Luis Ceze, Karin Strauss, Yuan-Jyue Chen, John Reif
Journal of the American Chemical Society | May 2020, Vol 142(21): pp. 9587-9593
Stabilizing Synthetic DNA for Long-term Data Storage with Earth Alkaline Salts
A. Xavier Kohll , Philipp L. Antkowiak, Weida D. Chen , Bichlien Nguyen, Wendelin J. Stark , Luis Ceze, Karin Strauss, Robert N. Grass
Chemical Communications | February 2020
Probing the Physical Limits of Reliable DNA Data Retrieval
Lee Organick, Yuan-Jyue Chen, Siena Dumas Ang, Randolph Lopez, Xiaomeng Liu, Karin Strauss, Luis Ceze
Nature Communications | January 2020, Vol 11(616)
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DNA Assembly for Nanopore Data Storage Readout
Randolph Lopez, Yuan-Jyue Chen, Siena Dumas Ang, Sergey Yekhanin, Konstantin Makarychev, Miklos Z. Racz, Georg Seelig, Karin Strauss, Luis Ceze
Nature Communications | July 2019, Vol 10:2933
Combining Data Longevity with High Storage Capacity—Layer‐by‐Layer DNA Encapsulated in Magnetic Nanoparticles
Weida D. Chen, A. Xavier Kohll, Bichlien Nguyen, Julian Koch, Reinhard Heckel, Wendelin J. Stark, Luis Ceze, Karin Strauss, Robert N. Grass
Advanced Functional Materials | May 2019
Molecular Digital Data Storage using DNA
Luis Ceze, Jeff Nivala, Karin Strauss
Nature Reviews Genetics | May 2019
Puddle: A Dynamic, Error-Correcting, Full-Stack Microfluidics Platform
Max Willsey, Ashley Stephenson, Chris Takahashi, Pranav Vaid, Bichlien Nguyen, Michal Piszczek, Christine Betts, Sharon Newman, Sarang Joshi, Karin Strauss, Luis Ceze
ASPLOS '19 | April 2019
High Density DNA Data Storage Library via Dehydration with Digital Microfluidic Retrieval
Sharon Newman, Ashley Stephenson, Max Willsey, Bichlien Nguyen, Christopher N. Takahashi, Karin Strauss, Luis Ceze
Nature Communications | April 2019, Vol 9
(2019)10:1706
Demonstration of End-to-End Automation of DNA Data Storage
Christopher N. Takahashi, Bichlien Nguyen, Karin Strauss, Luis Ceze
Nature Scientific Reports | March 2019, Vol 9
Article number: 4998 (2019)
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DNA Data Storage and Hybrid Molecular–Electronic Computing
Doug Carmean, Luis Ceze, Georg Seelig, Kendall Stewart, Karin Strauss, Max Willsey
Proceedings of the IEEE | December 2018, Vol 107(1)
A Content-Addressable DNA Database with Learned Sequence Encodings
Kendall Stewart, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze
24th International Conference On DNA Computing and Molecular Programming | October 2018
Random Access in Large-Scale DNA Data Storage
Lee Organick, Siena Dumas Ang, Yuan-Jyue Chen, Randolph Lopez, Sergey Yekhanin, Konstantin Makarychev, Miklos Z Racz, Govinda Kamath, Parikshit Gopalan, Bichlien Nguyen, Christopher N Takahashi, Sharon Newman, Hsing-Yeh Parker, Cyrus Rashtchian, Kendall Stewart, Gagan Gupta, Robert Carlson, John Mulligan, Doug Carmean, Georg Seelig, Luis Ceze, Karin Strauss
Nature Biotechnology | March 2018, Vol 36(3)
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Clustering Billions of Reads for DNA Data Storage
Cyrus Rashtchian, Konstantin Makarychev, Miklos Racz, Siena Ang, Djordje Jevdjic, Sergey Yekhanin, Luis Ceze, Karin Strauss
Advances in Neural Information Processing Systems 30 | December 2017
Approximate Storage of Compressed and Encrypted Video
Djordje Jevdjic, Karin Strauss, Luis Ceze, Henrique S. Malvar
ASPLOS (International Conference on Architectural Support for Programming Languages and Operating Systems 2017) | April 2017
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A DNA-based Archival Storage System
James Bornholt, Randolph Lopez, Doug Carmean, Luis Ceze, Georg Seelig, Karin Strauss
ASPLOS 2016 (International Conference on Architectural Support for Programming Languages and Operating Systems) - to appear | April 2016
High-Density Image Storage Using Approximate Memory Cells
Qing Guo, Karin Strauss, Luis Ceze, Henrique S. Malvar
ASPLOS 2016 (International Conference on Architectural Support for Programming Languages and Operating Systems) - to appear | April 2016
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Toward Accelerating Deep Learning at Scale Using Specialized Hardware in the Datacenter
Kalin Ovtcharov, Olatunji Ruwase, Joo-Young Kim, Jeremy Fowers, Karin Strauss, Eric Chung
Proceedings of the 27th IEEE HotChips Symposium on High-Performance Chips (HotChips 2015) | August 2015
PocketTrend: Timely Identification and Delivery of Trending Search Content to Mobile Users
Gennady Pekhimenko, Dimitrios Lymberopoulos, Oriana Riva, Karin Strauss, Doug Burger
Proceedings of the 24th International World Wide Web Conference (WWW '15) | May 2015
Accelerating Deep Convolutional Neural Networks Using Specialized Hardware
Kalin Ovtcharov, Olatunji Ruwase, Joo-Young Kim, Jeremy Fowers, Karin Strauss, Eric Chung
February 2015
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Approximate Storage in Solid-State Memories
Adrian Sampson, Jacob Nelson, Karin Strauss, Luis Ceze
Transactions on Computer Systems | September 2014, Vol 32(3)
A High Memory Bandwidth FPGA Accelerator for Sparse Matrix-Vector Multiplication
Jeremy Fowers, Kalin Ovtcharov, Karin Strauss, Eric Chung, Greg Stitt
International Symposium on Field-Programmable Custom Computing Machines | May 2014
-
Approximate Storage
Adrian Sampson, Jacob Nelson, Karin Strauss, Luis Ceze
International Symposium on Microarchitecture | December 2013
Zombie Memory: Extending Memory Lifetime by Reviving Dead Blocks
Rodolfo Azevedo, John Davis, Karin Strauss, Parikshit Gopalan, Mark Manasse, Sergey Yekhanin
40th International Symposium on Computer Architecture | June 2013
DNA-based Molecular Architecture with Spatially Localized Components
Richard Muscat, Karin Strauss, Luis Ceze, Georg Seelig
40th International Symposium on Computer Architecture | June 2013
Using Managed Runtime Systems to Tolerate Holes in Wearable Memories
Tiejun Gao, Karin Strauss, Stephen M Blackburn, Doug Burger, James Larus, Kathryn McKinley, Jim Larus, Kathryn S McKinley
The ACM SIGPLAN Conference on Programming Language Design and Implementation | June 2013
Reducing Disruption from Subtle Information Delivery during a Conversation: Mode and Bandwidth Investigation
Eyal Ofek, Shamsi Iqbal, Karin Strauss
Sig Chi 2013 Human Factors in Computing Systems | April 2013
Supplement to Zombie Memory: Extending Memory Lifetime by Reviving Dead Blocks
John Davis, Karin Strauss, Parikshit Gopalan, Mark Manasse, Sergey Yekhanin
MSR-TR-2013-47 | April 2013
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Progressive authentication: deciding when to authenticate on mobile phones
Oriana Riva, Chuan Qin, Karin Strauss, Dimitrios Lymberopoulos
21st USENIX Security Symposium | August 2012
Goldilocks and the Two Mobile Devices: Going Beyond All-Or-Nothing Access to a Device’s Applications
Eiji Hayashi, Oriana Riva, Karin Strauss, A.J. Brush, Stuart Schechter
Symposium On Usable Privacy and Security | July 2012
Symposium On Usable Privacy and Security
RADISH: Always-On Sound and Complete Race Detection in Software and Hardware
Joseph Devietti, Benjamin P. Wood, Karin Strauss, Luis Ceze, Dan Grossman, Shaz Qadeer
Proceedings of the 39th International Symposium on Computer Architecture | June 2012
PocketWeb: Instant Web Browsing for Mobile Devices
Dimitrios Lymberopoulos, Oriana Riva, Karin Strauss, Akshay Mittal, Alexandros Ntoulas
ASPLOS 2012 (Architectural Support for Programming Languages and Operating Systems) | March 2012
ASPLOS 2012 (Architectural Support for Programming Languages and Operating Systems)
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Preventing PCM Banks from Seizing Too Much Power
Andrew Hay, Karin Strauss, Timothy Sherwood, Gabriel H. Loh, Doug Burger
MICRO-44 (International Symposium on Microarchitecture) | December 2011
MICRO-44 (International Symposium on Microarchitecture)
Accelerating Data Race Detection with Minimal Hardware Support
Rodrigo Gonzalez-Alberquilla, Karin Strauss, Luis Ceze, Luis Piñuel
EuroPar 2011 (International Conference on Parallel and Distributed Computing) | August 2011
EuroPar 2011 (International Conference on Parallel and Distributed Computing)
The Impact of Memory Models on Software Reliability in Multiprocessors
Alexander Jaffe, Thomas Moscibroda, Laura Effinger-Dean, Luis Ceze, Karin Strauss
PODC 2010 (Symposium on Principles of Distributed Computing) | June 2011
Pocket Cloudlets
Emmanouil Koukoumidis, Dimitrios Lymberopoulos, Karin Strauss, Jie Liu, Doug Burger
ASPLOS 2011 (International Conference on Architectural Support for Programming Languages and Operating Systems | March 2011
-
ColorSafe: Architectural Support for Debugging and Dynamically Avoiding Multi-Variable Atomicity Violations
Brandon Lucia, Luis Ceze, Karin Strauss
ISCA 2010 (International Symposium on Computer Architecture) | June 2010
ISCA 2010 (International Symposium on Computer Architecture)
Conflict Exceptions: Simplifying Concurrent Language Semantics with Precise Hardware Exceptions for Data-Races
Brandon Lucia, Luis Ceze, Karin Strauss, Shaz Qadeer, Hans-J. Boehm
ISCA 2010 (International Symposium on Computer Architecture) | June 2010
Use ECP, not ECC, for Hard Failures in Resistive Memories
Stuart Schechter, , Karin Strauss, Doug Burger
ISCA 2010 (International Symposium on Computer Architecture) | June 2010
ISCA 2010 (International Symposium on Computer Architecture)
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Conflict Exceptions: Providing Simple Parallel Language Semantics with Precise Hardware Exceptions
Brandon Lucia, Luis Ceze, Karin Strauss, Shaz Qadeer, Hans-J. Boehm
MSR-TR-2009-149 | July 2009
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AtomAid: Detecting and Surviving Atomicity Violations
Brandon Lucia, Joseph Devietti, Karin Strauss, Luís Ceze
ISCA 2008 (International Symposium on Computer Architecture) | June 2008
ISCA 2008 (International Symposium on Computer Architecture)
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UncoRq: Unconstrained Snoop Request Delivery in Embedded-Ring Multiprocessors
Karin Strauss, Xiaowei Shen, Josep Torrellas
MICRO-40 (International Symposium on Microarchitecture) | December 2007
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CAVA: Using Checkpoint-Assisted Value Prediction to Hide L2 Misses
Luís Ceze, Karin Strauss, James Tuck, José Renau, Josep Torrellas
TACO (Transactions on Architecture and Code Optimization) | June 2006
Flexible Snooping: Adaptive Forwarding and Filtering of Snoops in Embedded-Ring Multiprocessors
Karin Strauss, Xiaowei Shen, Josep Torrellas
ISCA 2006 (International Symposium on Computer Architecture) | June 2006
POSH: A TLS Compiler that Exploits Program Structure
Wei Liu, James Tuck, Luís Ceze, Wonsun Ahn, Karin Strauss, José Renau, Josep Torrellas
PPoPP 2006 (Principles and Practice of Parallel Programming) | March 2006
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Tasking with Out-of-Order Spawn in TLS Chip Multiprocessors: Microarchitecture and Compilation
José Renau, James Tuck, Wei Liu, Luís Ceze, Karin Strauss, Josep Torrellas
ICS 2005 (International Conference on Supercomputing) | June 2005
Thread-Level Speculation on a CMP Can Be Energy Efficient
José Renau, Karin Strauss, Luís Ceze, Wei Liu, Smruti Sarangi, James Tuck, Josep Torrellas
ICS 2005 (International Conference on Supercomputing) | June 2005
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CAVA: Hiding L2 Misses with Checkpoint-Assisted VAlue Prediction
Luís Ceze, Karin Strauss, James Tuck, José Renau, Josep Torrellas
CAL (Computer Architecture Letters) | December 2004
-
An Overview of the Blue Gene/L System Software Organization
George Almasi, Ralph Bellofatto, José Brunheroto, Călin Caşcaval, José G. Castaños, Luís Ceze, Paul Crumley, C. Christopher Erway, Joseph Gagliano, Derek Lieber, José E. Moreira, Alda Sanomiya, Karin Strauss
EuroPar 2003 (International Conference on Parallel and Distributed Computing) | August 2003
EuroPar 2003 (International Conference on Parallel and Distributed Computing)
Distinguished paper - also published in Parallel Processing Letters, Vol.13, Number 4, December 2003
Full Circle: Simulating Linux Clusters on Linux Clusters
Luís Ceze, Karin Strauss, George Almasi, Patrick J. Bohrer, José R. Brunheroto, Călin Caşcaval, José G. Castaños, Derek Lieber, Xavier Martorell, José E Moreira, Alda Sanomiya, Eugen Schenfeld
CWCE (Linux Clusters Institute International Conference on Linux Clusters) | June 2003
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An Overview of the BlueGene/L Supercomputer
The BlueGene-L Team, Karin Strauss
SC 2002 (Supercomputing) | November 2002
Test of Time Award
“Test of Time” award at the 2020 Supercomputing Conference
Blue Gene/L, a system-on-a-chip
The BlueGene-L Team, Karin Strauss
CC 2002 (International Conference on Cluster Computing) | September 2002
Cellular Supercomputing with System-on-a-Chip
The BlueGene-L Team, Karin Strauss
ISSCC 2002 (International Solid State Circuits Conference) | February 2002
Evaluation of a Multithreaded Architecture for Cellular Computing
Călin Caşcaval, José G. Castaños, Luís Ceze, Monty Denneau, Manish Gupta, Derek Lieber, José E. Moreira, Karin Strauss, Jr Henry S. Warren
HPCA 2002 (High Performance Computer Architecture) | February 2002
Publications by Research Area
-
The DNA Data Storage Model
Dave Landsman, Karin Strauss
IEEE Computer | June 2023, Vol 56(7): pp. 78-85
A Combinatorial PCR Method for Efficient, Selective Oligo Retrieval from Complex Oligo Pools
Claris Winston, Lee Organick, David Ward, Luis Ceze, Karin Strauss, Yuan-Jyue Chen
ACS Synthetic Biology | February 2022
Scaling DNA data storage with nanoscale electrode wells
Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss
Science Advances | November 2021
Robust Digital Molecular Design of Binarized Neural Networks
Johannes Linder, Yuan-Jyue Chen, David Wong, Georg Seelig, Luis Ceze, Karin Strauss
Leibniz International Proceedings in Informatics (LIPIcs) | September 2021, Vol 205(DNA 27)
Molecular-level similarity search brings computing to DNA data storage
Callista Bee, Yuan-Jyue Chen, Melissa Queen, David Ward, Xiaomeng Liu, Lee Organick, Georg Seelig, Karin Strauss, Luis Ceze
Nature Communications | August 2021, Vol 12(4764)
An Empirical Comparison of Preservation Methods for Synthetic DNA Data Storage
Lee Organick, Bichlien Nguyen, Rachel McAmis, Weida D. Chen, A. Xavier Kohll, Siena Dumas Ang, Robert Grass, Luis Ceze, Karin Strauss
Small Methods | January 2021
Rapid and robust assembly and decoding of molecular tags with DNA-based nanopore signatures
Kathryn Doroschak, Karen Zhang, Melissa Queen, Aishwarya Mandyam, Karin Strauss, Luis Ceze, Jeff Nivalla
Nature Communications | November 2020, Vol 11(5454)
Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA
Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss
Electronics Goes Green 2020 | September 2020
PurpleDrop: A Digital Microfluidics-based Platform for Hybrid Molecular-Electronics Applications
Ashley Stephenson, Max Willsey, Jeff McBride, Sharon Newman, Bichlien Nguyen, Christopher N Takahashi, Karin Strauss, Luis Ceze
IEEE Micro | September 2020, Vol 40(5): pp. 76-86
Quantifying Molecular Bias in DNA Data Storage
Yuan-Jyue Chen, Christopher N. Takahashi, Lee Organick, Callista Bee, Siena Dumas Ang, Patrick Weiss, Bill Peck, Georg Seelig, Luis Ceze, Karin Strauss
Nature Communications | June 2020, Vol 11(3264)
Content-Based Similarity Search in Large-Scale DNA Data Storage Systems
Callista Bee, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze
May 2020
Stabilizing Synthetic DNA for Long-term Data Storage with Earth Alkaline Salts
A. Xavier Kohll , Philipp L. Antkowiak, Weida D. Chen , Bichlien Nguyen, Wendelin J. Stark , Luis Ceze, Karin Strauss, Robert N. Grass
Chemical Communications | February 2020
Probing the Physical Limits of Reliable DNA Data Retrieval
Lee Organick, Yuan-Jyue Chen, Siena Dumas Ang, Randolph Lopez, Xiaomeng Liu, Karin Strauss, Luis Ceze
Nature Communications | January 2020, Vol 11(616)
Combining Data Longevity with High Storage Capacity—Layer‐by‐Layer DNA Encapsulated in Magnetic Nanoparticles
Weida D. Chen, A. Xavier Kohll, Bichlien Nguyen, Julian Koch, Reinhard Heckel, Wendelin J. Stark, Luis Ceze, Karin Strauss, Robert N. Grass
Advanced Functional Materials | May 2019
Molecular Digital Data Storage using DNA
Luis Ceze, Jeff Nivala, Karin Strauss
Nature Reviews Genetics | May 2019
Puddle: A Dynamic, Error-Correcting, Full-Stack Microfluidics Platform
Max Willsey, Ashley Stephenson, Chris Takahashi, Pranav Vaid, Bichlien Nguyen, Michal Piszczek, Christine Betts, Sharon Newman, Sarang Joshi, Karin Strauss, Luis Ceze
ASPLOS '19 | April 2019
High Density DNA Data Storage Library via Dehydration with Digital Microfluidic Retrieval
Sharon Newman, Ashley Stephenson, Max Willsey, Bichlien Nguyen, Christopher N. Takahashi, Karin Strauss, Luis Ceze
Nature Communications | April 2019, Vol 9
(2019)10:1706
Demonstration of End-to-End Automation of DNA Data Storage
Christopher N. Takahashi, Bichlien Nguyen, Karin Strauss, Luis Ceze
Nature Scientific Reports | March 2019, Vol 9
Article number: 4998 (2019)
DNA Data Storage and Hybrid Molecular–Electronic Computing
Doug Carmean, Luis Ceze, Georg Seelig, Kendall Stewart, Karin Strauss, Max Willsey
Proceedings of the IEEE | December 2018, Vol 107(1)
High-Density Image Storage Using Approximate Memory Cells
Qing Guo, Karin Strauss, Luis Ceze, Henrique S. Malvar
ASPLOS 2016 (International Conference on Architectural Support for Programming Languages and Operating Systems) - to appear | April 2016
A DNA-based Archival Storage System
James Bornholt, Randolph Lopez, Doug Carmean, Luis Ceze, Georg Seelig, Karin Strauss
ASPLOS 2016 (International Conference on Architectural Support for Programming Languages and Operating Systems) - to appear | April 2016
Toward Accelerating Deep Learning at Scale Using Specialized Hardware in the Datacenter
Kalin Ovtcharov, Olatunji Ruwase, Joo-Young Kim, Jeremy Fowers, Karin Strauss, Eric Chung
Proceedings of the 27th IEEE HotChips Symposium on High-Performance Chips (HotChips 2015) | August 2015
PocketTrend: Timely Identification and Delivery of Trending Search Content to Mobile Users
Gennady Pekhimenko, Dimitrios Lymberopoulos, Oriana Riva, Karin Strauss, Doug Burger
Proceedings of the 24th International World Wide Web Conference (WWW '15) | May 2015
Accelerating Deep Convolutional Neural Networks Using Specialized Hardware
Kalin Ovtcharov, Olatunji Ruwase, Joo-Young Kim, Jeremy Fowers, Karin Strauss, Eric Chung
February 2015
Approximate Storage in Solid-State Memories
Adrian Sampson, Jacob Nelson, Karin Strauss, Luis Ceze
Transactions on Computer Systems | September 2014, Vol 32(3)
A High Memory Bandwidth FPGA Accelerator for Sparse Matrix-Vector Multiplication
Jeremy Fowers, Kalin Ovtcharov, Karin Strauss, Eric Chung, Greg Stitt
International Symposium on Field-Programmable Custom Computing Machines | May 2014
Approximate Storage
Adrian Sampson, Jacob Nelson, Karin Strauss, Luis Ceze
International Symposium on Microarchitecture | December 2013
Zombie Memory: Extending Memory Lifetime by Reviving Dead Blocks
Rodolfo Azevedo, John Davis, Karin Strauss, Parikshit Gopalan, Mark Manasse, Sergey Yekhanin
40th International Symposium on Computer Architecture | June 2013
DNA-based Molecular Architecture with Spatially Localized Components
Richard Muscat, Karin Strauss, Luis Ceze, Georg Seelig
40th International Symposium on Computer Architecture | June 2013
Using Managed Runtime Systems to Tolerate Holes in Wearable Memories
Tiejun Gao, Karin Strauss, Stephen M Blackburn, Doug Burger, James Larus, Kathryn McKinley, Jim Larus, Kathryn S McKinley
The ACM SIGPLAN Conference on Programming Language Design and Implementation | June 2013
Supplement to Zombie Memory: Extending Memory Lifetime by Reviving Dead Blocks
John Davis, Karin Strauss, Parikshit Gopalan, Mark Manasse, Sergey Yekhanin
MSR-TR-2013-47 | April 2013
Goldilocks and the Two Mobile Devices: Going Beyond All-Or-Nothing Access to a Device’s Applications
Eiji Hayashi, Oriana Riva, Karin Strauss, A.J. Brush, Stuart Schechter
Symposium On Usable Privacy and Security | July 2012
Symposium On Usable Privacy and Security
RADISH: Always-On Sound and Complete Race Detection in Software and Hardware
Joseph Devietti, Benjamin P. Wood, Karin Strauss, Luis Ceze, Dan Grossman, Shaz Qadeer
Proceedings of the 39th International Symposium on Computer Architecture | June 2012
PocketWeb: Instant Web Browsing for Mobile Devices
Dimitrios Lymberopoulos, Oriana Riva, Karin Strauss, Akshay Mittal, Alexandros Ntoulas
ASPLOS 2012 (Architectural Support for Programming Languages and Operating Systems) | March 2012
ASPLOS 2012 (Architectural Support for Programming Languages and Operating Systems)
Preventing PCM Banks from Seizing Too Much Power
Andrew Hay, Karin Strauss, Timothy Sherwood, Gabriel H. Loh, Doug Burger
MICRO-44 (International Symposium on Microarchitecture) | December 2011
MICRO-44 (International Symposium on Microarchitecture)
Accelerating Data Race Detection with Minimal Hardware Support
Rodrigo Gonzalez-Alberquilla, Karin Strauss, Luis Ceze, Luis Piñuel
EuroPar 2011 (International Conference on Parallel and Distributed Computing) | August 2011
EuroPar 2011 (International Conference on Parallel and Distributed Computing)
The Impact of Memory Models on Software Reliability in Multiprocessors
Alexander Jaffe, Thomas Moscibroda, Laura Effinger-Dean, Luis Ceze, Karin Strauss
PODC 2010 (Symposium on Principles of Distributed Computing) | June 2011
Pocket Cloudlets
Emmanouil Koukoumidis, Dimitrios Lymberopoulos, Karin Strauss, Jie Liu, Doug Burger
ASPLOS 2011 (International Conference on Architectural Support for Programming Languages and Operating Systems | March 2011
ColorSafe: Architectural Support for Debugging and Dynamically Avoiding Multi-Variable Atomicity Violations
Brandon Lucia, Luis Ceze, Karin Strauss
ISCA 2010 (International Symposium on Computer Architecture) | June 2010
ISCA 2010 (International Symposium on Computer Architecture)
Conflict Exceptions: Simplifying Concurrent Language Semantics with Precise Hardware Exceptions for Data-Races
Brandon Lucia, Luis Ceze, Karin Strauss, Shaz Qadeer, Hans-J. Boehm
ISCA 2010 (International Symposium on Computer Architecture) | June 2010
Conflict Exceptions: Providing Simple Parallel Language Semantics with Precise Hardware Exceptions
Brandon Lucia, Luis Ceze, Karin Strauss, Shaz Qadeer, Hans-J. Boehm
MSR-TR-2009-149 | July 2009
Blue Gene/L, a system-on-a-chip
The BlueGene-L Team, Karin Strauss
CC 2002 (International Conference on Cluster Computing) | September 2002
Evaluation of a Multithreaded Architecture for Cellular Computing
Călin Caşcaval, José G. Castaños, Luís Ceze, Monty Denneau, Manish Gupta, Derek Lieber, José E. Moreira, Karin Strauss, Jr Henry S. Warren
HPCA 2002 (High Performance Computer Architecture) | February 2002
Cellular Supercomputing with System-on-a-Chip
The BlueGene-L Team, Karin Strauss
ISSCC 2002 (International Solid State Circuits Conference) | February 2002
-
Spatially Selective Electrochemical Cleavage of a Polymerase-Nucleotide Conjugate
Jake Smith, Bichlien Nguyen, Rob Carlson, Jeffrey G. Bertram, Sebastian Palluk, Daniel H. Arlow, Karin Strauss
ACS Synthetic Biology | May 2023
Biobased materials for sustainable printed circuit boards
Oladele A Ogunseitan , Julie M Schoenung, Johnny Lincoln, Bichlien Nguyen, Karin Strauss, Kali Frost, Eric Schwartz, Haoyang He, Maryam Ibrahim
Nature Reviews Materials | September 2022
Integrating DNA Encapsulates and Digital Microfluidics for Automated Data Storage in DNA
Philipp L. Antkowiak, Julian Koch, Bichlien Nguyen, Wendelin J. Stark, Karin Strauss, Luis Ceze, Robert N. Grass
Small | February 2022
Scaling DNA data storage with nanoscale electrode wells
Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss
Science Advances | November 2021
An Empirical Comparison of Preservation Methods for Synthetic DNA Data Storage
Lee Organick, Bichlien Nguyen, Rachel McAmis, Weida D. Chen, A. Xavier Kohll, Siena Dumas Ang, Robert Grass, Luis Ceze, Karin Strauss
Small Methods | January 2021
Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA
Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss
Electronics Goes Green 2020 | September 2020
PurpleDrop: A Digital Microfluidics-based Platform for Hybrid Molecular-Electronics Applications
Ashley Stephenson, Max Willsey, Jeff McBride, Sharon Newman, Bichlien Nguyen, Christopher N Takahashi, Karin Strauss, Luis Ceze
IEEE Micro | September 2020, Vol 40(5): pp. 76-86
Quantifying Molecular Bias in DNA Data Storage
Yuan-Jyue Chen, Christopher N. Takahashi, Lee Organick, Callista Bee, Siena Dumas Ang, Patrick Weiss, Bill Peck, Georg Seelig, Luis Ceze, Karin Strauss
Nature Communications | June 2020, Vol 11(3264)
Content-Based Similarity Search in Large-Scale DNA Data Storage Systems
Callista Bee, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze
May 2020
Probing the Physical Limits of Reliable DNA Data Retrieval
Lee Organick, Yuan-Jyue Chen, Siena Dumas Ang, Randolph Lopez, Xiaomeng Liu, Karin Strauss, Luis Ceze
Nature Communications | January 2020, Vol 11(616)
Combining Data Longevity with High Storage Capacity—Layer‐by‐Layer DNA Encapsulated in Magnetic Nanoparticles
Weida D. Chen, A. Xavier Kohll, Bichlien Nguyen, Julian Koch, Reinhard Heckel, Wendelin J. Stark, Luis Ceze, Karin Strauss, Robert N. Grass
Advanced Functional Materials | May 2019
Molecular Digital Data Storage using DNA
Luis Ceze, Jeff Nivala, Karin Strauss
Nature Reviews Genetics | May 2019
Puddle: A Dynamic, Error-Correcting, Full-Stack Microfluidics Platform
Max Willsey, Ashley Stephenson, Chris Takahashi, Pranav Vaid, Bichlien Nguyen, Michal Piszczek, Christine Betts, Sharon Newman, Sarang Joshi, Karin Strauss, Luis Ceze
ASPLOS '19 | April 2019
High Density DNA Data Storage Library via Dehydration with Digital Microfluidic Retrieval
Sharon Newman, Ashley Stephenson, Max Willsey, Bichlien Nguyen, Christopher N. Takahashi, Karin Strauss, Luis Ceze
Nature Communications | April 2019, Vol 9
(2019)10:1706
Demonstration of End-to-End Automation of DNA Data Storage
Christopher N. Takahashi, Bichlien Nguyen, Karin Strauss, Luis Ceze
Nature Scientific Reports | March 2019, Vol 9
Article number: 4998 (2019)
DNA Data Storage and Hybrid Molecular–Electronic Computing
Doug Carmean, Luis Ceze, Georg Seelig, Kendall Stewart, Karin Strauss, Max Willsey
Proceedings of the IEEE | December 2018, Vol 107(1)
A Content-Addressable DNA Database with Learned Sequence Encodings
Kendall Stewart, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze
24th International Conference On DNA Computing and Molecular Programming | October 2018
Approximate Storage of Compressed and Encrypted Video
Djordje Jevdjic, Karin Strauss, Luis Ceze, Henrique S. Malvar
ASPLOS (International Conference on Architectural Support for Programming Languages and Operating Systems 2017) | April 2017
Toward Accelerating Deep Learning at Scale Using Specialized Hardware in the Datacenter
Kalin Ovtcharov, Olatunji Ruwase, Joo-Young Kim, Jeremy Fowers, Karin Strauss, Eric Chung
Proceedings of the 27th IEEE HotChips Symposium on High-Performance Chips (HotChips 2015) | August 2015
Accelerating Deep Convolutional Neural Networks Using Specialized Hardware
Kalin Ovtcharov, Olatunji Ruwase, Joo-Young Kim, Jeremy Fowers, Karin Strauss, Eric Chung
February 2015
Accelerating Data Race Detection with Minimal Hardware Support
Rodrigo Gonzalez-Alberquilla, Karin Strauss, Luis Ceze, Luis Piñuel
EuroPar 2011 (International Conference on Parallel and Distributed Computing) | August 2011
EuroPar 2011 (International Conference on Parallel and Distributed Computing)
Flexible Snooping: Adaptive Forwarding and Filtering of Snoops in Embedded-Ring Multiprocessors
Karin Strauss, Xiaowei Shen, Josep Torrellas
ISCA 2006 (International Symposium on Computer Architecture) | June 2006
CAVA: Using Checkpoint-Assisted Value Prediction to Hide L2 Misses
Luís Ceze, Karin Strauss, James Tuck, José Renau, Josep Torrellas
TACO (Transactions on Architecture and Code Optimization) | June 2006
Tasking with Out-of-Order Spawn in TLS Chip Multiprocessors: Microarchitecture and Compilation
José Renau, James Tuck, Wei Liu, Luís Ceze, Karin Strauss, Josep Torrellas
ICS 2005 (International Conference on Supercomputing) | June 2005
CAVA: Hiding L2 Misses with Checkpoint-Assisted VAlue Prediction
Luís Ceze, Karin Strauss, James Tuck, José Renau, Josep Torrellas
CAL (Computer Architecture Letters) | December 2004
Full Circle: Simulating Linux Clusters on Linux Clusters
Luís Ceze, Karin Strauss, George Almasi, Patrick J. Bohrer, José R. Brunheroto, Călin Caşcaval, José G. Castaños, Derek Lieber, Xavier Martorell, José E Moreira, Alda Sanomiya, Eugen Schenfeld
CWCE (Linux Clusters Institute International Conference on Linux Clusters) | June 2003
-
Spatially Selective Electrochemical Cleavage of a Polymerase-Nucleotide Conjugate
Jake Smith, Bichlien Nguyen, Rob Carlson, Jeffrey G. Bertram, Sebastian Palluk, Daniel H. Arlow, Karin Strauss
ACS Synthetic Biology | May 2023
DNA storage in thermoresponsive microcapsules for repeated random multiplexed data access
Bas W. A. Bögels, Bichlien Nguyen, David Ward, Levena Gascoigne, David P. Schrijver, Anna-Maria Makri Pistikou, Alex Joesaar, Shuo Yang, Ilja K. Voets, Willem J. M. Mulder, Andrew Phillips, Stephen Mann, Georg Seelig, Karin Strauss, Yuan-Jyue Chen, Tom F. A. de Greef
Nature Nanotechnology | May 2023
Information decay and enzymatic information recovery for DNA data storage
Linda C. Meiser, Andreas L. Gimpel, Tejas Deshpande, Gabriela Libort, Weida D. Chen, Reinhard Heckel, Bichlien Nguyen, Karin Strauss, Wendelin J. Stark, Robert N. Grass
Communications Biology | October 2022
Preserving DNA in Biodegradable Organosilica Encapsulates
Julian Koch, Ann-Christin Kerl, Natascha Schawalder, Anne M. Luescher, Bichlien Nguyen, Karin Strauss, Wendelin J. Stark, Robert N. Grass
Langmuir | September 2022
Integrating DNA Encapsulates and Digital Microfluidics for Automated Data Storage in DNA
Philipp L. Antkowiak, Julian Koch, Bichlien Nguyen, Wendelin J. Stark, Karin Strauss, Luis Ceze, Robert N. Grass
Small | February 2022
Anhydrous calcium phosphate crystals stabilize DNA for dry storage
Philipp L. Antkowiak , Julian Koch, Przemyslaw Rzepka, Bichlien Nguyen, Karin Strauss, Wendelin Jan Stark, Robert N. Grass
Chemical Communications | February 2022
Molecular-level similarity search brings computing to DNA data storage
Callista Bee, Yuan-Jyue Chen, Melissa Queen, David Ward, Xiaomeng Liu, Lee Organick, Georg Seelig, Karin Strauss, Luis Ceze
Nature Communications | August 2021, Vol 12(4764)
Content-Based Similarity Search in Large-Scale DNA Data Storage Systems
Callista Bee, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze
May 2020
A Content-Addressable DNA Database with Learned Sequence Encodings
Kendall Stewart, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze
24th International Conference On DNA Computing and Molecular Programming | October 2018
PocketTrend: Timely Identification and Delivery of Trending Search Content to Mobile Users
Gennady Pekhimenko, Dimitrios Lymberopoulos, Oriana Riva, Karin Strauss, Doug Burger
Proceedings of the 24th International World Wide Web Conference (WWW '15) | May 2015
-
DNA storage in thermoresponsive microcapsules for repeated random multiplexed data access
Bas W. A. Bögels, Bichlien Nguyen, David Ward, Levena Gascoigne, David P. Schrijver, Anna-Maria Makri Pistikou, Alex Joesaar, Shuo Yang, Ilja K. Voets, Willem J. M. Mulder, Andrew Phillips, Stephen Mann, Georg Seelig, Karin Strauss, Yuan-Jyue Chen, Tom F. A. de Greef
Nature Nanotechnology | May 2023
Information decay and enzymatic information recovery for DNA data storage
Linda C. Meiser, Andreas L. Gimpel, Tejas Deshpande, Gabriela Libort, Weida D. Chen, Reinhard Heckel, Bichlien Nguyen, Karin Strauss, Wendelin J. Stark, Robert N. Grass
Communications Biology | October 2022
Biobased materials for sustainable printed circuit boards
Oladele A Ogunseitan , Julie M Schoenung, Johnny Lincoln, Bichlien Nguyen, Karin Strauss, Kali Frost, Eric Schwartz, Haoyang He, Maryam Ibrahim
Nature Reviews Materials | September 2022
Preserving DNA in Biodegradable Organosilica Encapsulates
Julian Koch, Ann-Christin Kerl, Natascha Schawalder, Anne M. Luescher, Bichlien Nguyen, Karin Strauss, Wendelin J. Stark, Robert N. Grass
Langmuir | September 2022
Integrating DNA Encapsulates and Digital Microfluidics for Automated Data Storage in DNA
Philipp L. Antkowiak, Julian Koch, Bichlien Nguyen, Wendelin J. Stark, Karin Strauss, Luis Ceze, Robert N. Grass
Small | February 2022
Anhydrous calcium phosphate crystals stabilize DNA for dry storage
Philipp L. Antkowiak , Julian Koch, Przemyslaw Rzepka, Bichlien Nguyen, Karin Strauss, Wendelin Jan Stark, Robert N. Grass
Chemical Communications | February 2022
Synthetic DNA applications in information technology
Linda C. Meiser, Bichlien Nguyen, Yuan-Jyue Chen, Jeff Nivala, Karin Strauss, Luis Ceze, Robert N. Grass
Nature Communications | January 2022
Scaling DNA data storage with nanoscale electrode wells
Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss
Science Advances | November 2021
-
Information decay and enzymatic information recovery for DNA data storage
Linda C. Meiser, Andreas L. Gimpel, Tejas Deshpande, Gabriela Libort, Weida D. Chen, Reinhard Heckel, Bichlien Nguyen, Karin Strauss, Wendelin J. Stark, Robert N. Grass
Communications Biology | October 2022
Synthetic DNA applications in information technology
Linda C. Meiser, Bichlien Nguyen, Yuan-Jyue Chen, Jeff Nivala, Karin Strauss, Luis Ceze, Robert N. Grass
Nature Communications | January 2022
Probing the Physical Limits of Reliable DNA Data Retrieval
Lee Organick, Yuan-Jyue Chen, Siena Dumas Ang, Randolph Lopez, Xiaomeng Liu, Karin Strauss, Luis Ceze
Nature Communications | January 2020, Vol 11(616)
Puddle: A Dynamic, Error-Correcting, Full-Stack Microfluidics Platform
Max Willsey, Ashley Stephenson, Chris Takahashi, Pranav Vaid, Bichlien Nguyen, Michal Piszczek, Christine Betts, Sharon Newman, Sarang Joshi, Karin Strauss, Luis Ceze
ASPLOS '19 | April 2019
Demonstration of End-to-End Automation of DNA Data Storage
Christopher N. Takahashi, Bichlien Nguyen, Karin Strauss, Luis Ceze
Nature Scientific Reports | March 2019, Vol 9
Article number: 4998 (2019)
Clustering Billions of Reads for DNA Data Storage
Cyrus Rashtchian, Konstantin Makarychev, Miklos Racz, Siena Ang, Djordje Jevdjic, Sergey Yekhanin, Luis Ceze, Karin Strauss
Advances in Neural Information Processing Systems 30 | December 2017
-
Information decay and enzymatic information recovery for DNA data storage
Linda C. Meiser, Andreas L. Gimpel, Tejas Deshpande, Gabriela Libort, Weida D. Chen, Reinhard Heckel, Bichlien Nguyen, Karin Strauss, Wendelin J. Stark, Robert N. Grass
Communications Biology | October 2022
Preserving DNA in Biodegradable Organosilica Encapsulates
Julian Koch, Ann-Christin Kerl, Natascha Schawalder, Anne M. Luescher, Bichlien Nguyen, Karin Strauss, Wendelin J. Stark, Robert N. Grass
Langmuir | September 2022
Integrating DNA Encapsulates and Digital Microfluidics for Automated Data Storage in DNA
Philipp L. Antkowiak, Julian Koch, Bichlien Nguyen, Wendelin J. Stark, Karin Strauss, Luis Ceze, Robert N. Grass
Small | February 2022
A Combinatorial PCR Method for Efficient, Selective Oligo Retrieval from Complex Oligo Pools
Claris Winston, Lee Organick, David Ward, Luis Ceze, Karin Strauss, Yuan-Jyue Chen
ACS Synthetic Biology | February 2022
Anhydrous calcium phosphate crystals stabilize DNA for dry storage
Philipp L. Antkowiak , Julian Koch, Przemyslaw Rzepka, Bichlien Nguyen, Karin Strauss, Wendelin Jan Stark, Robert N. Grass
Chemical Communications | February 2022
Synthetic DNA applications in information technology
Linda C. Meiser, Bichlien Nguyen, Yuan-Jyue Chen, Jeff Nivala, Karin Strauss, Luis Ceze, Robert N. Grass
Nature Communications | January 2022
An Empirical Comparison of Preservation Methods for Synthetic DNA Data Storage
Lee Organick, Bichlien Nguyen, Rachel McAmis, Weida D. Chen, A. Xavier Kohll, Siena Dumas Ang, Robert Grass, Luis Ceze, Karin Strauss
Small Methods | January 2021
PurpleDrop: A Digital Microfluidics-based Platform for Hybrid Molecular-Electronics Applications
Ashley Stephenson, Max Willsey, Jeff McBride, Sharon Newman, Bichlien Nguyen, Christopher N Takahashi, Karin Strauss, Luis Ceze
IEEE Micro | September 2020, Vol 40(5): pp. 76-86
Quantifying Molecular Bias in DNA Data Storage
Yuan-Jyue Chen, Christopher N. Takahashi, Lee Organick, Callista Bee, Siena Dumas Ang, Patrick Weiss, Bill Peck, Georg Seelig, Luis Ceze, Karin Strauss
Nature Communications | June 2020, Vol 11(3264)
Content-Based Similarity Search in Large-Scale DNA Data Storage Systems
Callista Bee, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze
May 2020
Using Strand Displacing Polymerase To Program Chemical Reaction Networks
Shalin Shah, Jasmine Wee, Tianqi Song, Luis Ceze, Karin Strauss, Yuan-Jyue Chen, John Reif
Journal of the American Chemical Society | May 2020, Vol 142(21): pp. 9587-9593
Stabilizing Synthetic DNA for Long-term Data Storage with Earth Alkaline Salts
A. Xavier Kohll , Philipp L. Antkowiak, Weida D. Chen , Bichlien Nguyen, Wendelin J. Stark , Luis Ceze, Karin Strauss, Robert N. Grass
Chemical Communications | February 2020
DNA Assembly for Nanopore Data Storage Readout
Randolph Lopez, Yuan-Jyue Chen, Siena Dumas Ang, Sergey Yekhanin, Konstantin Makarychev, Miklos Z. Racz, Georg Seelig, Karin Strauss, Luis Ceze
Nature Communications | July 2019, Vol 10:2933
Combining Data Longevity with High Storage Capacity—Layer‐by‐Layer DNA Encapsulated in Magnetic Nanoparticles
Weida D. Chen, A. Xavier Kohll, Bichlien Nguyen, Julian Koch, Reinhard Heckel, Wendelin J. Stark, Luis Ceze, Karin Strauss, Robert N. Grass
Advanced Functional Materials | May 2019
Molecular Digital Data Storage using DNA
Luis Ceze, Jeff Nivala, Karin Strauss
Nature Reviews Genetics | May 2019
High Density DNA Data Storage Library via Dehydration with Digital Microfluidic Retrieval
Sharon Newman, Ashley Stephenson, Max Willsey, Bichlien Nguyen, Christopher N. Takahashi, Karin Strauss, Luis Ceze
Nature Communications | April 2019, Vol 9
(2019)10:1706
DNA-based Molecular Architecture with Spatially Localized Components
Richard Muscat, Karin Strauss, Luis Ceze, Georg Seelig
40th International Symposium on Computer Architecture | June 2013
-
Biobased materials for sustainable printed circuit boards
Oladele A Ogunseitan , Julie M Schoenung, Johnny Lincoln, Bichlien Nguyen, Karin Strauss, Kali Frost, Eric Schwartz, Haoyang He, Maryam Ibrahim
Nature Reviews Materials | September 2022
A Combinatorial PCR Method for Efficient, Selective Oligo Retrieval from Complex Oligo Pools
Claris Winston, Lee Organick, David Ward, Luis Ceze, Karin Strauss, Yuan-Jyue Chen
ACS Synthetic Biology | February 2022
Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA
Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss
Electronics Goes Green 2020 | September 2020
-
A Tale of Two Mice: Sustainable Electronic Design and Prototyping
Vicente Arroyos, Maria L K Viitaniemi, Nicholas Keehn, Vaidehi Oruganti, Winston Saunders, Karin Strauss, Vikram Iyer, Bichlien Nguyen
CHI 2022 | April 2022
Reducing Disruption from Subtle Information Delivery during a Conversation: Mode and Bandwidth Investigation
Eyal Ofek, Shamsi Iqbal, Karin Strauss
Sig Chi 2013 Human Factors in Computing Systems | April 2013
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Synthetic DNA applications in information technology
Linda C. Meiser, Bichlien Nguyen, Yuan-Jyue Chen, Jeff Nivala, Karin Strauss, Luis Ceze, Robert N. Grass
Nature Communications | January 2022
DNA Assembly for Nanopore Data Storage Readout
Randolph Lopez, Yuan-Jyue Chen, Siena Dumas Ang, Sergey Yekhanin, Konstantin Makarychev, Miklos Z. Racz, Georg Seelig, Karin Strauss, Luis Ceze
Nature Communications | July 2019, Vol 10:2933
Clustering Billions of Reads for DNA Data Storage
Cyrus Rashtchian, Konstantin Makarychev, Miklos Racz, Siena Ang, Djordje Jevdjic, Sergey Yekhanin, Luis Ceze, Karin Strauss
Advances in Neural Information Processing Systems 30 | December 2017
-
Robust Digital Molecular Design of Binarized Neural Networks
Johannes Linder, Yuan-Jyue Chen, David Wong, Georg Seelig, Luis Ceze, Karin Strauss
Leibniz International Proceedings in Informatics (LIPIcs) | September 2021, Vol 205(DNA 27)
Accelerating Deep Convolutional Neural Networks Using Specialized Hardware
Kalin Ovtcharov, Olatunji Ruwase, Joo-Young Kim, Jeremy Fowers, Karin Strauss, Eric Chung
February 2015
-
Random Access in Large-Scale DNA Data Storage
Lee Organick, Siena Dumas Ang, Yuan-Jyue Chen, Randolph Lopez, Sergey Yekhanin, Konstantin Makarychev, Miklos Z Racz, Govinda Kamath, Parikshit Gopalan, Bichlien Nguyen, Christopher N Takahashi, Sharon Newman, Hsing-Yeh Parker, Cyrus Rashtchian, Kendall Stewart, Gagan Gupta, Robert Carlson, John Mulligan, Doug Carmean, Georg Seelig, Luis Ceze, Karin Strauss
Nature Biotechnology | March 2018, Vol 36(3)
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Accelerating Deep Convolutional Neural Networks Using Specialized Hardware
Kalin Ovtcharov, Olatunji Ruwase, Joo-Young Kim, Jeremy Fowers, Karin Strauss, Eric Chung
February 2015
Reducing Disruption from Subtle Information Delivery during a Conversation: Mode and Bandwidth Investigation
Eyal Ofek, Shamsi Iqbal, Karin Strauss
Sig Chi 2013 Human Factors in Computing Systems | April 2013
-
Using Managed Runtime Systems to Tolerate Holes in Wearable Memories
Tiejun Gao, Karin Strauss, Stephen M Blackburn, Doug Burger, James Larus, Kathryn McKinley, Jim Larus, Kathryn S McKinley
The ACM SIGPLAN Conference on Programming Language Design and Implementation | June 2013
RADISH: Always-On Sound and Complete Race Detection in Software and Hardware
Joseph Devietti, Benjamin P. Wood, Karin Strauss, Luis Ceze, Dan Grossman, Shaz Qadeer
Proceedings of the 39th International Symposium on Computer Architecture | June 2012
Conflict Exceptions: Simplifying Concurrent Language Semantics with Precise Hardware Exceptions for Data-Races
Brandon Lucia, Luis Ceze, Karin Strauss, Shaz Qadeer, Hans-J. Boehm
ISCA 2010 (International Symposium on Computer Architecture) | June 2010
Conflict Exceptions: Providing Simple Parallel Language Semantics with Precise Hardware Exceptions
Brandon Lucia, Luis Ceze, Karin Strauss, Shaz Qadeer, Hans-J. Boehm
MSR-TR-2009-149 | July 2009
AtomAid: Detecting and Surviving Atomicity Violations
Brandon Lucia, Joseph Devietti, Karin Strauss, Luís Ceze
ISCA 2008 (International Symposium on Computer Architecture) | June 2008
ISCA 2008 (International Symposium on Computer Architecture)
POSH: A TLS Compiler that Exploits Program Structure
Wei Liu, James Tuck, Luís Ceze, Wonsun Ahn, Karin Strauss, José Renau, Josep Torrellas
PPoPP 2006 (Principles and Practice of Parallel Programming) | March 2006
An Overview of the Blue Gene/L System Software Organization
George Almasi, Ralph Bellofatto, José Brunheroto, Călin Caşcaval, José G. Castaños, Luís Ceze, Paul Crumley, C. Christopher Erway, Joseph Gagliano, Derek Lieber, José E. Moreira, Alda Sanomiya, Karin Strauss
EuroPar 2003 (International Conference on Parallel and Distributed Computing) | August 2003
EuroPar 2003 (International Conference on Parallel and Distributed Computing)
Distinguished paper - also published in Parallel Processing Letters, Vol.13, Number 4, December 2003
An Overview of the BlueGene/L Supercomputer
The BlueGene-L Team, Karin Strauss
SC 2002 (Supercomputing) | November 2002
Test of Time Award
“Test of Time” award at the 2020 Supercomputing Conference
-
Progressive authentication: deciding when to authenticate on mobile phones
Oriana Riva, Chuan Qin, Karin Strauss, Dimitrios Lymberopoulos
21st USENIX Security Symposium | August 2012
-
Use ECP, not ECC, for Hard Failures in Resistive Memories
Stuart Schechter, , Karin Strauss, Doug Burger
ISCA 2010 (International Symposium on Computer Architecture) | June 2010
ISCA 2010 (International Symposium on Computer Architecture)
UncoRq: Unconstrained Snoop Request Delivery in Embedded-Ring Multiprocessors
Karin Strauss, Xiaowei Shen, Josep Torrellas
MICRO-40 (International Symposium on Microarchitecture) | December 2007
Thread-Level Speculation on a CMP Can Be Energy Efficient
José Renau, Karin Strauss, Luís Ceze, Wei Liu, Smruti Sarangi, James Tuck, Josep Torrellas
ICS 2005 (International Conference on Supercomputing) | June 2005
Publications by Type
-
The DNA Data Storage Model
Dave Landsman, Karin Strauss
IEEE Computer | June 2023, Vol 56(7): pp. 78-85
Spatially Selective Electrochemical Cleavage of a Polymerase-Nucleotide Conjugate
Jake Smith, Bichlien Nguyen, Rob Carlson, Jeffrey G. Bertram, Sebastian Palluk, Daniel H. Arlow, Karin Strauss
ACS Synthetic Biology | May 2023
DNA storage in thermoresponsive microcapsules for repeated random multiplexed data access
Bas W. A. Bögels, Bichlien Nguyen, David Ward, Levena Gascoigne, David P. Schrijver, Anna-Maria Makri Pistikou, Alex Joesaar, Shuo Yang, Ilja K. Voets, Willem J. M. Mulder, Andrew Phillips, Stephen Mann, Georg Seelig, Karin Strauss, Yuan-Jyue Chen, Tom F. A. de Greef
Nature Nanotechnology | May 2023
Information decay and enzymatic information recovery for DNA data storage
Linda C. Meiser, Andreas L. Gimpel, Tejas Deshpande, Gabriela Libort, Weida D. Chen, Reinhard Heckel, Bichlien Nguyen, Karin Strauss, Wendelin J. Stark, Robert N. Grass
Communications Biology | October 2022
Biobased materials for sustainable printed circuit boards
Oladele A Ogunseitan , Julie M Schoenung, Johnny Lincoln, Bichlien Nguyen, Karin Strauss, Kali Frost, Eric Schwartz, Haoyang He, Maryam Ibrahim
Nature Reviews Materials | September 2022
Preserving DNA in Biodegradable Organosilica Encapsulates
Julian Koch, Ann-Christin Kerl, Natascha Schawalder, Anne M. Luescher, Bichlien Nguyen, Karin Strauss, Wendelin J. Stark, Robert N. Grass
Langmuir | September 2022
Integrating DNA Encapsulates and Digital Microfluidics for Automated Data Storage in DNA
Philipp L. Antkowiak, Julian Koch, Bichlien Nguyen, Wendelin J. Stark, Karin Strauss, Luis Ceze, Robert N. Grass
Small | February 2022
A Combinatorial PCR Method for Efficient, Selective Oligo Retrieval from Complex Oligo Pools
Claris Winston, Lee Organick, David Ward, Luis Ceze, Karin Strauss, Yuan-Jyue Chen
ACS Synthetic Biology | February 2022
Anhydrous calcium phosphate crystals stabilize DNA for dry storage
Philipp L. Antkowiak , Julian Koch, Przemyslaw Rzepka, Bichlien Nguyen, Karin Strauss, Wendelin Jan Stark, Robert N. Grass
Chemical Communications | February 2022
Synthetic DNA applications in information technology
Linda C. Meiser, Bichlien Nguyen, Yuan-Jyue Chen, Jeff Nivala, Karin Strauss, Luis Ceze, Robert N. Grass
Nature Communications | January 2022
Scaling DNA data storage with nanoscale electrode wells
Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss
Science Advances | November 2021
Robust Digital Molecular Design of Binarized Neural Networks
Johannes Linder, Yuan-Jyue Chen, David Wong, Georg Seelig, Luis Ceze, Karin Strauss
Leibniz International Proceedings in Informatics (LIPIcs) | September 2021, Vol 205(DNA 27)
Molecular-level similarity search brings computing to DNA data storage
Callista Bee, Yuan-Jyue Chen, Melissa Queen, David Ward, Xiaomeng Liu, Lee Organick, Georg Seelig, Karin Strauss, Luis Ceze
Nature Communications | August 2021, Vol 12(4764)
An Empirical Comparison of Preservation Methods for Synthetic DNA Data Storage
Lee Organick, Bichlien Nguyen, Rachel McAmis, Weida D. Chen, A. Xavier Kohll, Siena Dumas Ang, Robert Grass, Luis Ceze, Karin Strauss
Small Methods | January 2021
Rapid and robust assembly and decoding of molecular tags with DNA-based nanopore signatures
Kathryn Doroschak, Karen Zhang, Melissa Queen, Aishwarya Mandyam, Karin Strauss, Luis Ceze, Jeff Nivalla
Nature Communications | November 2020, Vol 11(5454)
PurpleDrop: A Digital Microfluidics-based Platform for Hybrid Molecular-Electronics Applications
Ashley Stephenson, Max Willsey, Jeff McBride, Sharon Newman, Bichlien Nguyen, Christopher N Takahashi, Karin Strauss, Luis Ceze
IEEE Micro | September 2020, Vol 40(5): pp. 76-86
Quantifying Molecular Bias in DNA Data Storage
Yuan-Jyue Chen, Christopher N. Takahashi, Lee Organick, Callista Bee, Siena Dumas Ang, Patrick Weiss, Bill Peck, Georg Seelig, Luis Ceze, Karin Strauss
Nature Communications | June 2020, Vol 11(3264)
Using Strand Displacing Polymerase To Program Chemical Reaction Networks
Shalin Shah, Jasmine Wee, Tianqi Song, Luis Ceze, Karin Strauss, Yuan-Jyue Chen, John Reif
Journal of the American Chemical Society | May 2020, Vol 142(21): pp. 9587-9593
Stabilizing Synthetic DNA for Long-term Data Storage with Earth Alkaline Salts
A. Xavier Kohll , Philipp L. Antkowiak, Weida D. Chen , Bichlien Nguyen, Wendelin J. Stark , Luis Ceze, Karin Strauss, Robert N. Grass
Chemical Communications | February 2020
Probing the Physical Limits of Reliable DNA Data Retrieval
Lee Organick, Yuan-Jyue Chen, Siena Dumas Ang, Randolph Lopez, Xiaomeng Liu, Karin Strauss, Luis Ceze
Nature Communications | January 2020, Vol 11(616)
DNA Assembly for Nanopore Data Storage Readout
Randolph Lopez, Yuan-Jyue Chen, Siena Dumas Ang, Sergey Yekhanin, Konstantin Makarychev, Miklos Z. Racz, Georg Seelig, Karin Strauss, Luis Ceze
Nature Communications | July 2019, Vol 10:2933
Combining Data Longevity with High Storage Capacity—Layer‐by‐Layer DNA Encapsulated in Magnetic Nanoparticles
Weida D. Chen, A. Xavier Kohll, Bichlien Nguyen, Julian Koch, Reinhard Heckel, Wendelin J. Stark, Luis Ceze, Karin Strauss, Robert N. Grass
Advanced Functional Materials | May 2019
Molecular Digital Data Storage using DNA
Luis Ceze, Jeff Nivala, Karin Strauss
Nature Reviews Genetics | May 2019
High Density DNA Data Storage Library via Dehydration with Digital Microfluidic Retrieval
Sharon Newman, Ashley Stephenson, Max Willsey, Bichlien Nguyen, Christopher N. Takahashi, Karin Strauss, Luis Ceze
Nature Communications | April 2019, Vol 9
(2019)10:1706
Demonstration of End-to-End Automation of DNA Data Storage
Christopher N. Takahashi, Bichlien Nguyen, Karin Strauss, Luis Ceze
Nature Scientific Reports | March 2019, Vol 9
Article number: 4998 (2019)
DNA Data Storage and Hybrid Molecular–Electronic Computing
Doug Carmean, Luis Ceze, Georg Seelig, Kendall Stewart, Karin Strauss, Max Willsey
Proceedings of the IEEE | December 2018, Vol 107(1)
Random Access in Large-Scale DNA Data Storage
Lee Organick, Siena Dumas Ang, Yuan-Jyue Chen, Randolph Lopez, Sergey Yekhanin, Konstantin Makarychev, Miklos Z Racz, Govinda Kamath, Parikshit Gopalan, Bichlien Nguyen, Christopher N Takahashi, Sharon Newman, Hsing-Yeh Parker, Cyrus Rashtchian, Kendall Stewart, Gagan Gupta, Robert Carlson, John Mulligan, Doug Carmean, Georg Seelig, Luis Ceze, Karin Strauss
Nature Biotechnology | March 2018, Vol 36(3)
Approximate Storage in Solid-State Memories
Adrian Sampson, Jacob Nelson, Karin Strauss, Luis Ceze
Transactions on Computer Systems | September 2014, Vol 32(3)
CAVA: Using Checkpoint-Assisted Value Prediction to Hide L2 Misses
Luís Ceze, Karin Strauss, James Tuck, José Renau, Josep Torrellas
TACO (Transactions on Architecture and Code Optimization) | June 2006
CAVA: Hiding L2 Misses with Checkpoint-Assisted VAlue Prediction
Luís Ceze, Karin Strauss, James Tuck, José Renau, Josep Torrellas
CAL (Computer Architecture Letters) | December 2004
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A Tale of Two Mice: Sustainable Electronic Design and Prototyping
Vicente Arroyos, Maria L K Viitaniemi, Nicholas Keehn, Vaidehi Oruganti, Winston Saunders, Karin Strauss, Vikram Iyer, Bichlien Nguyen
CHI 2022 | April 2022
Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA
Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss
Electronics Goes Green 2020 | September 2020
Puddle: A Dynamic, Error-Correcting, Full-Stack Microfluidics Platform
Max Willsey, Ashley Stephenson, Chris Takahashi, Pranav Vaid, Bichlien Nguyen, Michal Piszczek, Christine Betts, Sharon Newman, Sarang Joshi, Karin Strauss, Luis Ceze
ASPLOS '19 | April 2019
A Content-Addressable DNA Database with Learned Sequence Encodings
Kendall Stewart, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze
24th International Conference On DNA Computing and Molecular Programming | October 2018
Clustering Billions of Reads for DNA Data Storage
Cyrus Rashtchian, Konstantin Makarychev, Miklos Racz, Siena Ang, Djordje Jevdjic, Sergey Yekhanin, Luis Ceze, Karin Strauss
Advances in Neural Information Processing Systems 30 | December 2017
Approximate Storage of Compressed and Encrypted Video
Djordje Jevdjic, Karin Strauss, Luis Ceze, Henrique S. Malvar
ASPLOS (International Conference on Architectural Support for Programming Languages and Operating Systems 2017) | April 2017
High-Density Image Storage Using Approximate Memory Cells
Qing Guo, Karin Strauss, Luis Ceze, Henrique S. Malvar
ASPLOS 2016 (International Conference on Architectural Support for Programming Languages and Operating Systems) - to appear | April 2016
A DNA-based Archival Storage System
James Bornholt, Randolph Lopez, Doug Carmean, Luis Ceze, Georg Seelig, Karin Strauss
ASPLOS 2016 (International Conference on Architectural Support for Programming Languages and Operating Systems) - to appear | April 2016
Toward Accelerating Deep Learning at Scale Using Specialized Hardware in the Datacenter
Kalin Ovtcharov, Olatunji Ruwase, Joo-Young Kim, Jeremy Fowers, Karin Strauss, Eric Chung
Proceedings of the 27th IEEE HotChips Symposium on High-Performance Chips (HotChips 2015) | August 2015
PocketTrend: Timely Identification and Delivery of Trending Search Content to Mobile Users
Gennady Pekhimenko, Dimitrios Lymberopoulos, Oriana Riva, Karin Strauss, Doug Burger
Proceedings of the 24th International World Wide Web Conference (WWW '15) | May 2015
A High Memory Bandwidth FPGA Accelerator for Sparse Matrix-Vector Multiplication
Jeremy Fowers, Kalin Ovtcharov, Karin Strauss, Eric Chung, Greg Stitt
International Symposium on Field-Programmable Custom Computing Machines | May 2014
Approximate Storage
Adrian Sampson, Jacob Nelson, Karin Strauss, Luis Ceze
International Symposium on Microarchitecture | December 2013
Zombie Memory: Extending Memory Lifetime by Reviving Dead Blocks
Rodolfo Azevedo, John Davis, Karin Strauss, Parikshit Gopalan, Mark Manasse, Sergey Yekhanin
40th International Symposium on Computer Architecture | June 2013
DNA-based Molecular Architecture with Spatially Localized Components
Richard Muscat, Karin Strauss, Luis Ceze, Georg Seelig
40th International Symposium on Computer Architecture | June 2013
Using Managed Runtime Systems to Tolerate Holes in Wearable Memories
Tiejun Gao, Karin Strauss, Stephen M Blackburn, Doug Burger, James Larus, Kathryn McKinley, Jim Larus, Kathryn S McKinley
The ACM SIGPLAN Conference on Programming Language Design and Implementation | June 2013
Reducing Disruption from Subtle Information Delivery during a Conversation: Mode and Bandwidth Investigation
Eyal Ofek, Shamsi Iqbal, Karin Strauss
Sig Chi 2013 Human Factors in Computing Systems | April 2013
Progressive authentication: deciding when to authenticate on mobile phones
Oriana Riva, Chuan Qin, Karin Strauss, Dimitrios Lymberopoulos
21st USENIX Security Symposium | August 2012
Goldilocks and the Two Mobile Devices: Going Beyond All-Or-Nothing Access to a Device’s Applications
Eiji Hayashi, Oriana Riva, Karin Strauss, A.J. Brush, Stuart Schechter
Symposium On Usable Privacy and Security | July 2012
Symposium On Usable Privacy and Security
RADISH: Always-On Sound and Complete Race Detection in Software and Hardware
Joseph Devietti, Benjamin P. Wood, Karin Strauss, Luis Ceze, Dan Grossman, Shaz Qadeer
Proceedings of the 39th International Symposium on Computer Architecture | June 2012
PocketWeb: Instant Web Browsing for Mobile Devices
Dimitrios Lymberopoulos, Oriana Riva, Karin Strauss, Akshay Mittal, Alexandros Ntoulas
ASPLOS 2012 (Architectural Support for Programming Languages and Operating Systems) | March 2012
ASPLOS 2012 (Architectural Support for Programming Languages and Operating Systems)
Preventing PCM Banks from Seizing Too Much Power
Andrew Hay, Karin Strauss, Timothy Sherwood, Gabriel H. Loh, Doug Burger
MICRO-44 (International Symposium on Microarchitecture) | December 2011
MICRO-44 (International Symposium on Microarchitecture)
Accelerating Data Race Detection with Minimal Hardware Support
Rodrigo Gonzalez-Alberquilla, Karin Strauss, Luis Ceze, Luis Piñuel
EuroPar 2011 (International Conference on Parallel and Distributed Computing) | August 2011
EuroPar 2011 (International Conference on Parallel and Distributed Computing)
The Impact of Memory Models on Software Reliability in Multiprocessors
Alexander Jaffe, Thomas Moscibroda, Laura Effinger-Dean, Luis Ceze, Karin Strauss
PODC 2010 (Symposium on Principles of Distributed Computing) | June 2011
Pocket Cloudlets
Emmanouil Koukoumidis, Dimitrios Lymberopoulos, Karin Strauss, Jie Liu, Doug Burger
ASPLOS 2011 (International Conference on Architectural Support for Programming Languages and Operating Systems | March 2011
Use ECP, not ECC, for Hard Failures in Resistive Memories
Stuart Schechter, , Karin Strauss, Doug Burger
ISCA 2010 (International Symposium on Computer Architecture) | June 2010
ISCA 2010 (International Symposium on Computer Architecture)
ColorSafe: Architectural Support for Debugging and Dynamically Avoiding Multi-Variable Atomicity Violations
Brandon Lucia, Luis Ceze, Karin Strauss
ISCA 2010 (International Symposium on Computer Architecture) | June 2010
ISCA 2010 (International Symposium on Computer Architecture)
Conflict Exceptions: Simplifying Concurrent Language Semantics with Precise Hardware Exceptions for Data-Races
Brandon Lucia, Luis Ceze, Karin Strauss, Shaz Qadeer, Hans-J. Boehm
ISCA 2010 (International Symposium on Computer Architecture) | June 2010
AtomAid: Detecting and Surviving Atomicity Violations
Brandon Lucia, Joseph Devietti, Karin Strauss, Luís Ceze
ISCA 2008 (International Symposium on Computer Architecture) | June 2008
ISCA 2008 (International Symposium on Computer Architecture)
UncoRq: Unconstrained Snoop Request Delivery in Embedded-Ring Multiprocessors
Karin Strauss, Xiaowei Shen, Josep Torrellas
MICRO-40 (International Symposium on Microarchitecture) | December 2007
Flexible Snooping: Adaptive Forwarding and Filtering of Snoops in Embedded-Ring Multiprocessors
Karin Strauss, Xiaowei Shen, Josep Torrellas
ISCA 2006 (International Symposium on Computer Architecture) | June 2006
POSH: A TLS Compiler that Exploits Program Structure
Wei Liu, James Tuck, Luís Ceze, Wonsun Ahn, Karin Strauss, José Renau, Josep Torrellas
PPoPP 2006 (Principles and Practice of Parallel Programming) | March 2006
Tasking with Out-of-Order Spawn in TLS Chip Multiprocessors: Microarchitecture and Compilation
José Renau, James Tuck, Wei Liu, Luís Ceze, Karin Strauss, Josep Torrellas
ICS 2005 (International Conference on Supercomputing) | June 2005
Thread-Level Speculation on a CMP Can Be Energy Efficient
José Renau, Karin Strauss, Luís Ceze, Wei Liu, Smruti Sarangi, James Tuck, Josep Torrellas
ICS 2005 (International Conference on Supercomputing) | June 2005
An Overview of the Blue Gene/L System Software Organization
George Almasi, Ralph Bellofatto, José Brunheroto, Călin Caşcaval, José G. Castaños, Luís Ceze, Paul Crumley, C. Christopher Erway, Joseph Gagliano, Derek Lieber, José E. Moreira, Alda Sanomiya, Karin Strauss
EuroPar 2003 (International Conference on Parallel and Distributed Computing) | August 2003
EuroPar 2003 (International Conference on Parallel and Distributed Computing)
Distinguished paper - also published in Parallel Processing Letters, Vol.13, Number 4, December 2003
Full Circle: Simulating Linux Clusters on Linux Clusters
Luís Ceze, Karin Strauss, George Almasi, Patrick J. Bohrer, José R. Brunheroto, Călin Caşcaval, José G. Castaños, Derek Lieber, Xavier Martorell, José E Moreira, Alda Sanomiya, Eugen Schenfeld
CWCE (Linux Clusters Institute International Conference on Linux Clusters) | June 2003
An Overview of the BlueGene/L Supercomputer
The BlueGene-L Team, Karin Strauss
SC 2002 (Supercomputing) | November 2002
Test of Time Award
“Test of Time” award at the 2020 Supercomputing Conference
Blue Gene/L, a system-on-a-chip
The BlueGene-L Team, Karin Strauss
CC 2002 (International Conference on Cluster Computing) | September 2002
Evaluation of a Multithreaded Architecture for Cellular Computing
Călin Caşcaval, José G. Castaños, Luís Ceze, Monty Denneau, Manish Gupta, Derek Lieber, José E. Moreira, Karin Strauss, Jr Henry S. Warren
HPCA 2002 (High Performance Computer Architecture) | February 2002
Cellular Supercomputing with System-on-a-Chip
The BlueGene-L Team, Karin Strauss
ISSCC 2002 (International Solid State Circuits Conference) | February 2002
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Content-Based Similarity Search in Large-Scale DNA Data Storage Systems
Callista Bee, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze
May 2020
Accelerating Deep Convolutional Neural Networks Using Specialized Hardware
Kalin Ovtcharov, Olatunji Ruwase, Joo-Young Kim, Jeremy Fowers, Karin Strauss, Eric Chung
February 2015
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Supplement to Zombie Memory: Extending Memory Lifetime by Reviving Dead Blocks
John Davis, Karin Strauss, Parikshit Gopalan, Mark Manasse, Sergey Yekhanin
MSR-TR-2013-47 | April 2013
Conflict Exceptions: Providing Simple Parallel Language Semantics with Precise Hardware Exceptions
Brandon Lucia, Luis Ceze, Karin Strauss, Shaz Qadeer, Hans-J. Boehm
MSR-TR-2009-149 | July 2009