Project InnerEye – Democratizing Medical Imaging AI

Publications

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- Active label cleaning for improved dataset quality under resource constraints
  
  Melanie Bernhardt, Daniel Coelho de Castro, Ryutaro Tanno, Anton Schwaighofer, Kerem C. Tezcan, Miguel Monteiro, Shruthi Bannur, Matthew P. Lungren, Aditya Nori, Ben Glocker, Javier Alvarez-Valle, Ozan Oktay
  
  Nature Communications | March 2022, Vol 13(1161): pp. 1-11
  
  Publication Github Project
- Machine Learning for Auto-Segmentation in Radiotherapy Planning
  
  K Harrison, H Pullen, C Welsh, Ozan Oktay, Javier Alvarez-Valle, R Jena
  
  The Royal College of Radiologists – Clinical Oncology | January 2022, Vol 34(2): pp. 74-88
  
  Publication Project
- Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs
  
  Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro
  
  ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021
  
  PDF Preprint Project Project Project
- Addressing the Exorbitant Cost of Labeling Medical Images with Active Learning
  
  Saba Rahimi, Ozan Oktay, Javier Alvarez-Valle, Sujeeth Bharadwaj
  
  International Conference on Machine Learning in Medical Imaging and Analysis | June 2021
  
  Best Presentation Award
  
  Publication
- Secure Medical Image Analysis with CrypTFlow
  
  Javier Alvarez-Valle, Pratik Bhatu, Nishanth Chandran, Divya Gupta, Aditya Nori, Aseem Rastogi, Mayank Rathee, Rahul Sharma, Shubham Ugare
  
  NeurIPS PPML Workshop | December 2020
  
  Publication Project
- Evaluation of Deep Learning to Augment Image Guided Radiotherapy for Head and Neck and Prostate Cancers
  
  Ozan Oktay, Jay Nanavati, Anton Schwaighofer, David Carter, Melissa Bristow, Ryutaro Tanno, Gill Barnett, David Noble, Yvonne Rimmer, Rajesh Jena, Ben Glocker, Kenton O'Hara, Christopher Bishop, Javier Alvarez-Valle, Aditya Nori
  
  JAMA | November 2020
  
  Publication Video Github
- 3D Convolutional Neural Networks for Tumor Segmentation using Long-range 2D Context
  
  Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache
  
  Computerized Medical Imaging and Graphics | February 2019
  
  Publication
- Deep Learning with Mixed Supervision for Brain Tumor Segmentation
  
  Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache
  
  December 2018
  
  Publication
- Autosegmentation of prostate anatomy for radiation treatment planning using deep decision forests of radiomic features
  
  Meghan W Macomber, Mark Phillips, Ivan Tarapov, Rajesh Jena, Aditya Nori, David Carter, Loic Le Folgoc, Antonio Criminisi, Matthew J Nyflot
  
  Physics in Medicine & Biology | November 2018, Vol 63(23)
  
  Publication
- Autofocus Layer for Semantic Segmentation
  
  Yao Qin, Konstantinos Kamnitsas, Siddharth Ancha, Jay Nanavati, Garrison W. Cottrell, Antonio Criminisi, Aditya Nori
  
  International Conference on Medical Image Computing & Computer Assisted Intervention (MICCAI) | September 2018
  
  DOI Publication
- Semi-Supervised Learning via Compact Latent Space Clustering
  
  Konstantinos Kamnitsas, Daniel C. Castro, Loic Le Folgoc, Ian Walker, Ryutaro Tanno, Daniel Rueckert, Ben Glocker, Antonio Criminisi, Aditya Nori
  
  International Conference on Machine Learning (ICML) | June 2018
  
  Publication Publication
- Unsupervised domain adaptation in brain lesion segmentation with adversarial networks
  
  Konstantinos Kamnitsas, Christian Baumgartner, Christian Ledig, Virginia F.J. Newcombe, Joanna P. Simpson, Andrew D. Kane, David K. Menon, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker
  
  Information Processing in Medical Imaging (IPMI) | June 2017
  
  Publication
- Spectral Kernels for Probabilistic Analysis and Clustering of Shapes
  
  Loic Le Folgoc, Aditya Nori, Antonio Criminisi
  
  Information Processing in Medical Imaging (IPMI) | June 2017
  
  DOI PDF Publication
- Image Quality Transfer and Applications in Diffusion MRI
  
  Daniel C. Alexander, Darko Zikic, Aurobrata Gosh, Ryutaro Tanno, Viktor Wottschel, Jiaying Zhang, Enrico Kaden, Tim B. Dirby, Stamatios N. Sotiropoulos, Hui Zhang, Antonio Criminisi
  
  Neuroimage | March 2017
  
  Publication
- Sparse Bayesian registration of medical images for self-tuning of parameters and spatially adaptive parametrization of displacements.
  
  Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache
  
  Medical Image Analysis | January 2017, Vol 36: pp. 79-97
  
  PDF DOI
- Quantifying Registration Uncertainty with Sparse Bayesian Modeling
  
  Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache
  
  IEEE Transactions on Medical Imaging | December 2016
  
  Publication
- DeepMedic for Brain Tumor Segmentation
  
  Konstantinos Kamnitsas, Enzo Ferrante, Sarah Parisot, Christian Ledig, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker
  
  MICCAI Brain Lesion Workshop | October 2016
  
  DOI PDF Publication
- Lifted Auto-Context Forests for Brain Tumour Segmentation
  
  Loic Le Folgoc, Aditya Nori, Siddharth Ancha, Antonio Criminisi
  
  MICCAI Brain Lesion Workshop | October 2016
  
  DOI PDF Publication
- Generalisability of Image Quality Transfer: Can we approximate in-vivo human brains from dead monkey brains?
  
  Aurobrata Ghosh, V. Wottschel, Enrico Kaden, H. Zhang, Stamatios N. Sotiropoulos, D. Zikic, T. B. Dyrby, Antonio Criminisi, Daniel C. Alexander
  
  April 2016
  
  Publication Project
- Decision Forests, Convolutional Networks and the Models in-Between
  
  Yani Ioannou, Duncan Robertson, D. Zikic, Peter Kontschieder, Jamie Shotton, Matthew Brown, Antonio Criminisi
  
  March 2016
  
  DOI Publication Project
- Assessing Multiple Sclerosis with Kinect: Designing Computer Vision Systems for Real-World Use
  
  Cecily Morrison, Kit Huckvale, Bob Corish, Jonas Dorn, Peter Kontschieder, Kenton O'Hara, ASSESS MS Team, Antonio Criminisi, Abigail Sellen
  
  Human-Computer Interaction | January 2016
  
  Publication Publication Project
- Improving Indoor Mobility of the Visually Impaired with Depth-Based Spatial Sound
  
  Simon Blessenohl, Cecily Morrison, Antonio Criminisi, Jamie Shotton
  
  ICCV-ACVR workshop | December 2015
  
  DOI PDF PDF Publication
- Spectral Forests: Learning of Surface Data, Application to Cortical Parcellation
  
  Herve Lombaert, Antonio Criminisi, Nicholas Ayache
  
  Medical Image Computing and Computer Assisted Intervention (MICCAI) | October 2015
  
  DOI PDF Publication Project
- Prediction of expanded disability status scale subscores of motor dysfunction in multiple sclerosis using depth-sensing computer vision
  
  M. D'Souza, J. Burggraaff, P. Kontschieder, J. Dorn, C.P. Kamm, S. Seinheimer, P. Tewarie, C. Morrison, Abigail Sellen, Antonio Criminisi, F. Dahlke, B Uitdehaag, L. Kappos
  
  Multiple Sclerosis Journal | October 2015, Vol 21: pp. 409-409
  
  Publication
- The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)
  
  Bjoern H. Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth Gerstner, Marc-Andre Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Hervé Delingette, Cagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, Jose Antonio Mariz, Raphael Meier, Sergio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael Ryan, Duygu Sarikaya, Lawrence Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno Sousa, Nagesh K. Subbanna, Gabor Szekely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gozde Unal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, D. Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput
  
  IEEE Transactions on Medical Imaging | September 2015, Vol 34(10): pp. 1993-2024
  
  DOI PDF PDF
- Video-based paired-comparison ranking: a validation tool for fine-grained measurements of motor dysfunction in multiple sclerosis
  
  J. Burggraaff, J. Dorn, M. D'Souza, C. P. Kamm, P. Tewarie, P. Kontschieder, Cecily Morrison, A. Criminisi, F. Dahlke, L. Kappos, B. M. J. Uitdehaag, Antonio Criminisi , Abigail Sellen
  
  Multiple Sclerosis Journal | September 2015, Vol 21: pp. 127-128
  
  Publication
- Finetuned convolutional neural nets for cardiac MRI acquisition plane recognition
  
  J. Margeta, Antonio Criminisi, R. Cabrera Lozoya, D. C. Lee, N. Ayache
  
  Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization | June 2015
  
  Publication Publication
- Touchless interaction in surgical settings
  
  Tom Carrell, Helena Mentis, Graeme Penney, Antonio Criminisi, Kenton O'Hara, Abigail Sellen, Mark Rouncefield, Neville Dastur, Varnavas, Bob Corish
  
  Communications of the ACM | December 2014
  
  Publication Video Project
- Decision Forests for Segmentation of Left Atrium From 3D MRI
  
  J. Margeta, K. McLeod, Antonio Criminisi, N. Ayache
  
  MICCAI Workshop on Statistical Atlases and Computational Models of the Heart (STACOM) | October 2014
  
  Publication Project
- Classifier-Based Multi-atlas Label Propagation with Test-Specific Atlas Weighting for Correspondence-Free Scenarios
  
  Darko Zikic, Ben Glocker, Antonio Criminisi
  
  MICCAI Workshop on Medical Computer Vision: Algorithms for Big Data (bigMCV) | September 2014
  
  PDF DOI Publication
- Quantifying Progression of Multiple Sclerosis via Classification of Depth Videos
  
  Peter Kontschieder, Jonas F. Dorn, Cecily Morrison, Bob Corish, Darko Zikic, Abigail Sellen, Marcus DSouza, Christian P. Kamm, Jessica Burggraaff, Prejaas Tewarie, Thomas Vogel, Michael Azzarito, Ben Glocker, Peter Chin, Frank Dahlke, Chris Polman, Ludwig Kappos, Bernard Uitdehaag, Antonio Criminisi
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | September 2014
  
  Publication Project
- Video-based paired-comparison ranking: A validation tool for fine grained measures of motor dysfunction in multiple sclerosis
  
  Burggraaf J, D Souza M, Dorn J, Kamm C, Tewarie P, Kontschieder P, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Kappos L, Uitdehaag B
  
  European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) | September 2014
  
  Publication Project
- Infrared depth sensor based automated classification of motor dysfunction in multiple sclerosis – a proof-of-concept study
  
  Burggraaf J, Kamm C, Tewarie P, Peter Kontschieder, Dorn J, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Uitdehaag B, Kappos L
  
  August 2014
  
  Publication Project
- Encoding Atlases by Randomized Classification Forests for Efficient Multi-Atlas Label Propagation
  
  Darko Zikic, B. Glocker, Antonio Criminisi
  
  Medical Image Analysis | June 2014
  
  Publication
- Assessment of Disability in Multiple Sclerosis Using the Kinect-Camera System: A Proof-of-Concept Study
  
  Marcus D Souza, Christian Kamm, Jessica Burggraaff, Prejass Tewarie, Ben Glocker, Jonas Dorn, Thomas Vogel, Cecily Morrison, Abigail Sellen, Matthias Machacek, Peter Chin, Bernard Uitdehaag, Antonio Criminisi, Frank Dahlke, Chris Polman, Ludwig Kappos
  
  American Academy of Neurology Annual Meeting (AAN) | April 2014
  
  Publication Project Project
- Image Quality Transfer via Random Forest Regression: Applications in Diffusion MRI
  
  D. Alexander, Darko Zikic, H. Zhang, Antonio Criminisi
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014
  
  Publication Project
- Laplacian Forests: Semantic Image Segmentation by Guided Bagging
  
  H. Lombaert, D. Zikic, Antonio Criminisi, N. Ayache, Darko Zikic
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014
  
  Publication Project
- Recognizing Cardiac Magnetic Resonance Acquisition Planes
  
  J. Margeta, Antonio Criminisi, D. C. Lee, N. Ayache
  
  MIUA 2014 – Medical Image Understanding and Analysis | January 2014
  
  Publication Project
- Sparse Bayesian Registration
  
  L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014
  
  Publication Project
- Real-Time RGB-D Camera Relocalization
  
  Ben Glocker, Shahram Izadi, Jamie Shotton, Antonio Criminisi
  
  International Symposium on Mixed and Augmented Reality (ISMAR) | October 2013
  
  Publication Project Project Project
- Atlas Encoding by Randomized Forests for Efficient Label Propagation
  
  Darko Zikic, Ben Glocker, Antonio Criminisi
  
  MICCAI 2013 – 16th Intl Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI Young Scientist Award) | September 2013
  
  MICCAI 2013 – 16th Intl Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI Young Scientist Award)
  
  Publication
- Modality Propagation: Coherent Synthesis of Subject-Specific Scans with Data-Driven Regularization
  
  D. Ye, Darko Zikic, Ben Glocker, Antonio Criminisi, E. Konukoglu
  
  MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2013
  
  MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention
  
  Publication
- Vertebrae Localization in Pathological Spine CT via Dense Classification from Sparse Annotations
  
  Ben Glocker, Darko Zikic, Ender Konukoglu, David R. Haynor, Antonio Criminisi
  
  MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2013
  
  Publication Publication
- GeoF: Geodesic Forests for Learning Coupled Predictors
  
  P. Kontschieder, Pushmeet Kohli, Jamie Shotton, Antonio Criminisi
  
  Computer Vision and Pattern Recognition (CVPR), 2013 IEEE Conference on | June 2013
  
  ISBN: 978-0-7695-4989-7
  
  Publication Publication Project
- Decision Forests for Computer Vision and Medical Image Analysis
  
  A. Criminisi, J. Shotton, Antonio Criminisi, Jamie Shotton
  
  Published by Springer | February 2013
  
  ISBN: 978-1-4471-4928-6
  
  http://research.microsoft.com/en-us/projects/decisionforests/
  
  Publication Project Project
- Regression Forests for Efficient Anatomy Detection and Localization in Computed Tomography Scans
  
  Antonio Criminisi, Duncan Robertson, Ender Konukoglu, Jamie Shotton, S. Pathak, S. White, K. Siddiqui
  
  Medical Image Analysis (MedIA) | January 2013
  
  Publication Publication Project
- Classification Forests for Semantic Segmentation of Brain Lesions in Multi-Channel MRI
  
  E. Geremia, D. Zikic, E. Konukoglu, O.M. Thomas, S.J. Price, T. Das, R. Jena, N. Ayache, A. Criminisi, O. Clatz, B.H. Menze, B. Glocker, J. Shotton, Darko Zikic, Jamie Shotton, Ben Glocker, Antonio Criminisi
  
  Decision Forests for Computer Vision and Medical Image Analysis | Published by Springer | 2013 | Decision Forests for Computer Vision and Medical Image Analysis edition
  
  Publication
- Neighbourhood Approximation using Randomized Forests
  
  Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi
  
  Medical Image Analysis (Medical Image Analysis – MICCAI 2013 Best Paper Award) | January 2013
  
  Publication Project
- WESD – Weighted Spectral Distance for Measuring Shape Dissimilarity
  
  Ender Konukoglu, Ben Glocker, Antonio Criminisi, Kilian M. Pohl
  
  Transactions Pattern Analysis and Machine Intelligence (PAMI) | January 2013
  
  Publication
- Context-Sensitive Decision Forests for Object Detection
  
  Peter Kontschieder, Samuel Rota Bulo, Antonio Criminisi, Pushmeet Kohli, Marcello Pelillo, Horst Bischof
  
  NIPS’12 Proceedings of the 25th International Conference on Neural Information Processing Systems | December 2012
  
  Neural Information Processing Systems (NIPS)
  
  Publication Project
- Discriminative Segmentation-based Evaluation through Shape Dissimilarity
  
  Ben Glocker, Antonio Criminisi
  
  Transactions on Medical Imaging (TMI) | December 2012
  
  Publication
- Automatic Localization and Identification of Vertebrae in Arbitrary Field-of-View CT Scans
  
  Ben Glocker, J. Feulner, Antonio Criminisi, D. R. Haynor, Ender Konukoglu
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention
  
  The pdf is a modified version of the original publication. Typos in Eq. 1 and 3 have been corrected.
  
  Publication Publication Project
- Brain tumor cell density estimation from multi-modal MR images based on a synthetic tumor growth model
  
  E. Geremia, B. Menze, M. Prastawa, M.-A. Weber, Antonio Criminisi, N. Ayache
  
  MICCAI workshop on Medical Computer Vision (MCV) | October 2012
  
  Publication Project
- Context-sensitive Classification Forests for Segmentation of Brain Tumor Tissues
  
  Antonio Criminisi, Darko Zikic, Ben Glocker, Jamie Shotton
  
  MICCAI 2012 Challenge on Multimodal Brain Tumor Segmentation | October 2012
  
  Publication
- Current-based 4D shape analysis for the mechanical personalization of heart models
  
  L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache
  
  MICCAI workshop on Medical Computer Vision (MCV) | October 2012
  
  MICCAI workshop on Medical Computer Vision (MCV)
  
  Publication
- Decision Forests for Tissue-specific Segmentation of High-grade Gliomas in Multi-channel MR
  
  Antonio Criminisi, Darko Zikic, Ender Konukoglu, Ben Glocker, Jamie Shotton
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012
  
  Publication Publication Project
- Immediate ROI Search for 3D Medical Images
  
  K. Simonyan, M. Modat, S. Ourselin, A. Criminisi, A. Zisserman, Antonio Criminisi
  
  MICCAI workshop on Medical Content-based Retrieval for Clinical Decision Support (MCBR-CDS) | October 2012
  
  Publication
- Joint Classification-Regression Forests for Spatially Structured Multi-Object Segmentation
  
  Ben Glocker, Olivier Pauly, Ender Konukoglu, Antonio Criminisi
  
  ECCV 2012 – 12th European Conference on Computer Vision | October 2012
  
  Publication Publication Project
- Neighbourhood Approximation Forests
  
  Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012
  
  Publication Publication Project
- Layered Spatio-Temporal Forests for Left Ventricle Segmentation from 4D Cardiac MRI Data
  
  J. Margeta, E. Geremia, A. Criminisi, N. Ayache, Antonio Criminisi
  
  MICCAI workshop: Statistical Atlases and Computational Models of the Heart (STACOM) | September 2012
  
  Publication Project
- Comparative Analysis of Semantic Localization Accuracies Between Adult and Pediatric DICOM CT Images
  
  Duncan Robertson, Sayan D. Pathak, Antonio Criminisi, Steve White, David Haynor, Oliver Chen, Khan Siddiqui
  
  SPIE Medical Imaging | January 2012
  
  Publication Project
- Decision Forests: A Unified Framework for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning
  
  Antonio Criminisi, Jamie Shotton, Ender Konukoglu
  
  Foundations and Trends® in Computer Graphics and Vision | Published by NOW Publishers | 2012, Vol 7 | Foundations and Trends® in Computer Graphics and Vision: Vol. 7: No 2-3, pp 81-227 edition
  
  Publication Project Project
- Linking DICOM Pixel Data with Radiology Reports Using Automatic Semantic Annotation
  
  Sayan D. Pathak, Woojin Kim, Indeera Munasinghe, Antonio Criminisi, Steve White, Khan Siddiqui
  
  SPIE Medical Imaging | January 2012
  
  Publication Project
- Decision Forests for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning
  
  Antonio Criminisi, Ender Konukoglu, Jamie Shotton
  
  MSR-TR-2011-114 | October 2011
  
  Publication Project
- A Discriminative-Generative Model for Detecting Intravenous Contrast in CT Images
  
  Antonio Criminisi, K. Juluru, S. Pathak
  
  MICCAI | September 2011
  
  Publication Project
- Fast Multiple Organs Detection and Localization in Whole-Body MR Dixon Sequences
  
  O. Pauly, B. Glocker, A. Criminisi, N. Navab, D. Mateus, A. Martinez Moller, S. Nekolla, Antonio Criminisi, Ben Glocker
  
  MICCAI 2011 – 14th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2011
  
  Publication Project
- Immediate Structured Image Search for Medical Images
  
  Antonio Criminisi, A. Zisserman, K. Simonyan
  
  MICCAI | September 2011
  
  Publication
- Combining Generative and Discriminative Models for Semantic Segmentation of CT Scans via Active learning
  
  A. Montillo, Z. Tu, Antonio Criminisi, J. E. Iglesias, E. Konukoglu, Ender Konukoglu
  
  Information Processing in Medical Imaging (IPMI) | July 2011
  
  Germany
  
  Publication Project
- Entangled Decision Forests and their Application for Semantic Segmentation of CT Images
  
  A. Montillo, J. E. Iglesias, John Winn, Antonio Criminisi, D. Metaxas, Jamie Shotton
  
  Information Processing in Medical Imaging (IPMI) | July 2011
  
  Information Processing in Medical Imaging (IPMI)
  
  Bavaria, Germany
  
  Publication Project
- Exploring the potential for touchless interaction in image-guided interventional radiology
  
  Kenton O'Hara, Abigail Sellen, Antonio Criminisi
  
  Proceedings of CHI 2011 | May 2011
  
  Honourable Mention, Best of CHI Awards
  
  Publication Project Project
- Automatic Semantic Annotation and Validation of Anatomy in DICOM CT Images
  
  S. Pathak, Antonio Criminisi, S. White, I. Munasinghe, B. Sparks, D. Robertson, K. Siddiqui
  
  SPIE Medical Imaging | February 2011
  
  Publication
- Medical Computer Vision: recognition techniques and applications in medical imaging (1st MICCAI-MCV workshop)
  
  B. Menze, G. Langs, Z. Tu, A. Criminisi, Antonio Criminisi
  
  Published by Springer, February 2011
  
  Workshop held in conjunction with MICCAI 2010, Beijing, China.
  
  Publication
- Robust Linear Registration of CT Images using Random Regression Forests
  
  Ender Konukoglu, Antonio Criminisi, Sayan Pathak, Duncan Robertson, Steve White, David Haynor, Khan Siddiqui
  
  SPIE Medical Imaging | February 2011
  
  Publication Publication Project
- Mobile Cloud-Computer-aided Diagnosis System for Colon Cancer Screening with Motion-based Virtual Colonoscopic Navigation
  
  H. Yoshida, Y. Wu, W. Cai, J. J. Nappi, M. Hirano, A. Criminisi, Antonio Criminisi
  
  Radiological Society of North America (RSNA) | January 2011
  
  Radiological Society of North America (RSNA)
  
  Publication
- Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel Magnetic Resonance
  
  E. Geremia, O. Clatz, B. H. Menze, E. Konukoglu, A. Criminisi, N. Ayache, Antonio Criminisi
  
  NeuroImage | January 2011
  
  Publication Project
- Regression Forests for Efficient Anatomy Detection and Localization in CT Studies
  
  Antonio Criminisi, Jamie Shotton, D. Robertson, Ender Konukoglu
  
  Medical Computer Vision 2010: Recognition Techniques and Applications in Medical Imaging, MICCAI workshop | September 2010
  
  Publication Publication Project
- Volume Rendering on Server GPUs for Enterprise-Scale Medical Applications
  
  Toby Sharp, D. Robertson, Antonio Criminisi
  
  MSR-TR-2010-72 | June 2010
  
  Publication Access
- Anatomy-Driven Medical Image Search
  
  K. Simonyan, A. Zisserman, A. Criminisi, Antonio Criminisi
  
  Radiological Society of North America (RSNA) | January 2010
  
  Publication
- Automatic Semantic Segmentation of Anatomical Structures in CT Scans
  
  Antonio Criminisi, A. Montillo, Jamie Shotton, S. Pathak, John Winn, K. Siddiqui
  
  Radiological Society of North America (RSNA) | January 2010
  
  Publication Project
- Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images
  
  Ezequiel Geremia, Bjoern H. Menze, Oilivierr Clatz, Ender Konukoglu, Antonio Criminisi, Nicholas Ayache
  
  MICCAI | January 2010
  
  Publication Publication Project
- Automatic Semantic Parsing of CT Scans via Multiple Randomized Decision Trees
  
  Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli, Khan Siddiqui
  
  Radiological Society of North America (RSNA) | December 2009
  
  Publication Publication Project Project
- Interactive Geodesic Segmentation of n-Dimensional Medical Images on the Graphics Processor
  
  Antonio Criminisi, Toby Sharp, Khan Siddiqui
  
  Radiological Society of North America (RSNA) | December 2009
  
  Publication Publication
- Random Forest Classification for Automatic Delineation of Myocardium in Real-time 3D Echocardiography
  
  Victor Lempitsky, Michael Veroek, Alison Noble, Andrew Blake
  
  FIMH 2009 [best paper award] | June 2009
  
  best paper award
  
  Publication Project
- Surface Extraction from Binary Volumes with Higher-Order Smoothness
  
  Victor Lempitsky
  
  MSR-TR-2009-31 | March 2009
  
  Publication
- Decision Forests with Long-Range Spatial Context for Organ Localization in CT Volumes
  
  Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli
  
  MICCAI workshop on Probabilistic Models for Medical Image Analysis (MICCAI-PMMIA) | January 2009
  
  Publication Publication Project Project
- Discriminative, Semantic Segmentation of Brain Tissue in MR Images
  
  Zhao Yi, Antonio Criminisi, Jamie Shotton, Andrew Blake
  
  MICCAI 2009 | January 2009
  
  MICCAI 2009
  
  Publication Project
- GeoS: Geodesic Image Segmentation
  
  Antonio Criminisi, Toby Sharp, Andrew Blake
  
  Proc. European Conference on Computer Vision (ECCV) | January 2008
  
  ISBN: 978-3-540-88681-5
  
  Publication Publication Publication

- Active label cleaning for improved dataset quality under resource constraints
  
  Melanie Bernhardt, Daniel Coelho de Castro, Ryutaro Tanno, Anton Schwaighofer, Kerem C. Tezcan, Miguel Monteiro, Shruthi Bannur, Matthew P. Lungren, Aditya Nori, Ben Glocker, Javier Alvarez-Valle, Ozan Oktay
  
  Nature Communications | March 2022, Vol 13(1161): pp. 1-11
  
  Publication Github Project
- Machine Learning for Auto-Segmentation in Radiotherapy Planning
  
  K Harrison, H Pullen, C Welsh, Ozan Oktay, Javier Alvarez-Valle, R Jena
  
  The Royal College of Radiologists – Clinical Oncology | January 2022, Vol 34(2): pp. 74-88
  
  Publication Project
- Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs
  
  Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro
  
  ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021
  
  PDF Preprint Project Project Project
- Addressing the Exorbitant Cost of Labeling Medical Images with Active Learning
  
  Saba Rahimi, Ozan Oktay, Javier Alvarez-Valle, Sujeeth Bharadwaj
  
  International Conference on Machine Learning in Medical Imaging and Analysis | June 2021
  
  Best Presentation Award
  
  Publication
- Secure Medical Image Analysis with CrypTFlow
  
  Javier Alvarez-Valle, Pratik Bhatu, Nishanth Chandran, Divya Gupta, Aditya Nori, Aseem Rastogi, Mayank Rathee, Rahul Sharma, Shubham Ugare
  
  NeurIPS PPML Workshop | December 2020
  
  Publication Project
- Evaluation of Deep Learning to Augment Image Guided Radiotherapy for Head and Neck and Prostate Cancers
  
  Ozan Oktay, Jay Nanavati, Anton Schwaighofer, David Carter, Melissa Bristow, Ryutaro Tanno, Gill Barnett, David Noble, Yvonne Rimmer, Rajesh Jena, Ben Glocker, Kenton O'Hara, Christopher Bishop, Javier Alvarez-Valle, Aditya Nori
  
  JAMA | November 2020
  
  Publication Video Github
- 3D Convolutional Neural Networks for Tumor Segmentation using Long-range 2D Context
  
  Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache
  
  Computerized Medical Imaging and Graphics | February 2019
  
  Publication
- Deep Learning with Mixed Supervision for Brain Tumor Segmentation
  
  Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache
  
  December 2018
  
  Publication
- Autosegmentation of prostate anatomy for radiation treatment planning using deep decision forests of radiomic features
  
  Meghan W Macomber, Mark Phillips, Ivan Tarapov, Rajesh Jena, Aditya Nori, David Carter, Loic Le Folgoc, Antonio Criminisi, Matthew J Nyflot
  
  Physics in Medicine & Biology | November 2018, Vol 63(23)
  
  Publication
- Unsupervised domain adaptation in brain lesion segmentation with adversarial networks
  
  Konstantinos Kamnitsas, Christian Baumgartner, Christian Ledig, Virginia F.J. Newcombe, Joanna P. Simpson, Andrew D. Kane, David K. Menon, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker
  
  Information Processing in Medical Imaging (IPMI) | June 2017
  
  Publication
- Spectral Kernels for Probabilistic Analysis and Clustering of Shapes
  
  Loic Le Folgoc, Aditya Nori, Antonio Criminisi
  
  Information Processing in Medical Imaging (IPMI) | June 2017
  
  DOI PDF Publication
- Image Quality Transfer and Applications in Diffusion MRI
  
  Daniel C. Alexander, Darko Zikic, Aurobrata Gosh, Ryutaro Tanno, Viktor Wottschel, Jiaying Zhang, Enrico Kaden, Tim B. Dirby, Stamatios N. Sotiropoulos, Hui Zhang, Antonio Criminisi
  
  Neuroimage | March 2017
  
  Publication
- Sparse Bayesian registration of medical images for self-tuning of parameters and spatially adaptive parametrization of displacements.
  
  Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache
  
  Medical Image Analysis | January 2017, Vol 36: pp. 79-97
  
  PDF DOI
- Quantifying Registration Uncertainty with Sparse Bayesian Modeling
  
  Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache
  
  IEEE Transactions on Medical Imaging | December 2016
  
  Publication
- Lifted Auto-Context Forests for Brain Tumour Segmentation
  
  Loic Le Folgoc, Aditya Nori, Siddharth Ancha, Antonio Criminisi
  
  MICCAI Brain Lesion Workshop | October 2016
  
  DOI PDF Publication
- DeepMedic for Brain Tumor Segmentation
  
  Konstantinos Kamnitsas, Enzo Ferrante, Sarah Parisot, Christian Ledig, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker
  
  MICCAI Brain Lesion Workshop | October 2016
  
  DOI PDF Publication
- Exploring the potential for touchless interaction in image-guided interventional radiology
  
  Kenton O'Hara, Abigail Sellen, Antonio Criminisi
  
  Proceedings of CHI 2011 | May 2011
  
  Honourable Mention, Best of CHI Awards
  
  Publication Project Project
- Volume Rendering on Server GPUs for Enterprise-Scale Medical Applications
  
  Toby Sharp, D. Robertson, Antonio Criminisi
  
  MSR-TR-2010-72 | June 2010
  
  Publication Access
- Random Forest Classification for Automatic Delineation of Myocardium in Real-time 3D Echocardiography
  
  Victor Lempitsky, Michael Veroek, Alison Noble, Andrew Blake
  
  FIMH 2009 [best paper award] | June 2009
  
  best paper award
  
  Publication Project
- GeoS: Geodesic Image Segmentation
  
  Antonio Criminisi, Toby Sharp, Andrew Blake
  
  Proc. European Conference on Computer Vision (ECCV) | January 2008
  
  ISBN: 978-3-540-88681-5
  
  Publication Publication Publication
- Active label cleaning for improved dataset quality under resource constraints
  
  Melanie Bernhardt, Daniel Coelho de Castro, Ryutaro Tanno, Anton Schwaighofer, Kerem C. Tezcan, Miguel Monteiro, Shruthi Bannur, Matthew P. Lungren, Aditya Nori, Ben Glocker, Javier Alvarez-Valle, Ozan Oktay
  
  Nature Communications | March 2022, Vol 13(1161): pp. 1-11
  
  Publication Github Project
- Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs
  
  Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro
  
  ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021
  
  PDF Preprint Project Project Project
- Addressing the Exorbitant Cost of Labeling Medical Images with Active Learning
  
  Saba Rahimi, Ozan Oktay, Javier Alvarez-Valle, Sujeeth Bharadwaj
  
  International Conference on Machine Learning in Medical Imaging and Analysis | June 2021
  
  Best Presentation Award
  
  Publication
- Secure Medical Image Analysis with CrypTFlow
  
  Javier Alvarez-Valle, Pratik Bhatu, Nishanth Chandran, Divya Gupta, Aditya Nori, Aseem Rastogi, Mayank Rathee, Rahul Sharma, Shubham Ugare
  
  NeurIPS PPML Workshop | December 2020
  
  Publication Project
- Evaluation of Deep Learning to Augment Image Guided Radiotherapy for Head and Neck and Prostate Cancers
  
  Ozan Oktay, Jay Nanavati, Anton Schwaighofer, David Carter, Melissa Bristow, Ryutaro Tanno, Gill Barnett, David Noble, Yvonne Rimmer, Rajesh Jena, Ben Glocker, Kenton O'Hara, Christopher Bishop, Javier Alvarez-Valle, Aditya Nori
  
  JAMA | November 2020
  
  Publication Video Github
- Deep Learning with Mixed Supervision for Brain Tumor Segmentation
  
  Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache
  
  December 2018
  
  Publication
- Autofocus Layer for Semantic Segmentation
  
  Yao Qin, Konstantinos Kamnitsas, Siddharth Ancha, Jay Nanavati, Garrison W. Cottrell, Antonio Criminisi, Aditya Nori
  
  International Conference on Medical Image Computing & Computer Assisted Intervention (MICCAI) | September 2018
  
  DOI Publication
- Semi-Supervised Learning via Compact Latent Space Clustering
  
  Konstantinos Kamnitsas, Daniel C. Castro, Loic Le Folgoc, Ian Walker, Ryutaro Tanno, Daniel Rueckert, Ben Glocker, Antonio Criminisi, Aditya Nori
  
  International Conference on Machine Learning (ICML) | June 2018
  
  Publication Publication
- Unsupervised domain adaptation in brain lesion segmentation with adversarial networks
  
  Konstantinos Kamnitsas, Christian Baumgartner, Christian Ledig, Virginia F.J. Newcombe, Joanna P. Simpson, Andrew D. Kane, David K. Menon, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker
  
  Information Processing in Medical Imaging (IPMI) | June 2017
  
  Publication
- Spectral Kernels for Probabilistic Analysis and Clustering of Shapes
  
  Loic Le Folgoc, Aditya Nori, Antonio Criminisi
  
  Information Processing in Medical Imaging (IPMI) | June 2017
  
  DOI PDF Publication
- Lifted Auto-Context Forests for Brain Tumour Segmentation
  
  Loic Le Folgoc, Aditya Nori, Siddharth Ancha, Antonio Criminisi
  
  MICCAI Brain Lesion Workshop | October 2016
  
  DOI PDF Publication
- DeepMedic for Brain Tumor Segmentation
  
  Konstantinos Kamnitsas, Enzo Ferrante, Sarah Parisot, Christian Ledig, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker
  
  MICCAI Brain Lesion Workshop | October 2016
  
  DOI PDF Publication
- Generalisability of Image Quality Transfer: Can we approximate in-vivo human brains from dead monkey brains?
  
  Aurobrata Ghosh, V. Wottschel, Enrico Kaden, H. Zhang, Stamatios N. Sotiropoulos, D. Zikic, T. B. Dyrby, Antonio Criminisi, Daniel C. Alexander
  
  April 2016
  
  Publication Project
- Decision Forests, Convolutional Networks and the Models in-Between
  
  Yani Ioannou, Duncan Robertson, D. Zikic, Peter Kontschieder, Jamie Shotton, Matthew Brown, Antonio Criminisi
  
  March 2016
  
  DOI Publication Project
- Improving Indoor Mobility of the Visually Impaired with Depth-Based Spatial Sound
  
  Simon Blessenohl, Cecily Morrison, Antonio Criminisi, Jamie Shotton
  
  ICCV-ACVR workshop | December 2015
  
  DOI PDF PDF Publication
- Spectral Forests: Learning of Surface Data, Application to Cortical Parcellation
  
  Herve Lombaert, Antonio Criminisi, Nicholas Ayache
  
  Medical Image Computing and Computer Assisted Intervention (MICCAI) | October 2015
  
  DOI PDF Publication Project
- Prediction of expanded disability status scale subscores of motor dysfunction in multiple sclerosis using depth-sensing computer vision
  
  M. D'Souza, J. Burggraaff, P. Kontschieder, J. Dorn, C.P. Kamm, S. Seinheimer, P. Tewarie, C. Morrison, Abigail Sellen, Antonio Criminisi, F. Dahlke, B Uitdehaag, L. Kappos
  
  Multiple Sclerosis Journal | October 2015, Vol 21: pp. 409-409
  
  Publication
- The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)
  
  Bjoern H. Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth Gerstner, Marc-Andre Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Hervé Delingette, Cagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, Jose Antonio Mariz, Raphael Meier, Sergio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael Ryan, Duygu Sarikaya, Lawrence Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno Sousa, Nagesh K. Subbanna, Gabor Szekely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gozde Unal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, D. Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput
  
  IEEE Transactions on Medical Imaging | September 2015, Vol 34(10): pp. 1993-2024
  
  DOI PDF PDF
- Video-based paired-comparison ranking: a validation tool for fine-grained measurements of motor dysfunction in multiple sclerosis
  
  J. Burggraaff, J. Dorn, M. D'Souza, C. P. Kamm, P. Tewarie, P. Kontschieder, Cecily Morrison, A. Criminisi, F. Dahlke, L. Kappos, B. M. J. Uitdehaag, Antonio Criminisi , Abigail Sellen
  
  Multiple Sclerosis Journal | September 2015, Vol 21: pp. 127-128
  
  Publication
- Finetuned convolutional neural nets for cardiac MRI acquisition plane recognition
  
  J. Margeta, Antonio Criminisi, R. Cabrera Lozoya, D. C. Lee, N. Ayache
  
  Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization | June 2015
  
  Publication Publication
- Touchless interaction in surgical settings
  
  Tom Carrell, Helena Mentis, Graeme Penney, Antonio Criminisi, Kenton O'Hara, Abigail Sellen, Mark Rouncefield, Neville Dastur, Varnavas, Bob Corish
  
  Communications of the ACM | December 2014
  
  Publication Video Project
- Decision Forests for Segmentation of Left Atrium From 3D MRI
  
  J. Margeta, K. McLeod, Antonio Criminisi, N. Ayache
  
  MICCAI Workshop on Statistical Atlases and Computational Models of the Heart (STACOM) | October 2014
  
  Publication Project
- Classifier-Based Multi-atlas Label Propagation with Test-Specific Atlas Weighting for Correspondence-Free Scenarios
  
  Darko Zikic, Ben Glocker, Antonio Criminisi
  
  MICCAI Workshop on Medical Computer Vision: Algorithms for Big Data (bigMCV) | September 2014
  
  PDF DOI Publication
- Quantifying Progression of Multiple Sclerosis via Classification of Depth Videos
  
  Peter Kontschieder, Jonas F. Dorn, Cecily Morrison, Bob Corish, Darko Zikic, Abigail Sellen, Marcus DSouza, Christian P. Kamm, Jessica Burggraaff, Prejaas Tewarie, Thomas Vogel, Michael Azzarito, Ben Glocker, Peter Chin, Frank Dahlke, Chris Polman, Ludwig Kappos, Bernard Uitdehaag, Antonio Criminisi
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | September 2014
  
  Publication Project
- Video-based paired-comparison ranking: A validation tool for fine grained measures of motor dysfunction in multiple sclerosis
  
  Burggraaf J, D Souza M, Dorn J, Kamm C, Tewarie P, Kontschieder P, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Kappos L, Uitdehaag B
  
  European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) | September 2014
  
  Publication Project
- Infrared depth sensor based automated classification of motor dysfunction in multiple sclerosis – a proof-of-concept study
  
  Burggraaf J, Kamm C, Tewarie P, Peter Kontschieder, Dorn J, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Uitdehaag B, Kappos L
  
  August 2014
  
  Publication Project
- Encoding Atlases by Randomized Classification Forests for Efficient Multi-Atlas Label Propagation
  
  Darko Zikic, B. Glocker, Antonio Criminisi
  
  Medical Image Analysis | June 2014
  
  Publication
- Assessment of Disability in Multiple Sclerosis Using the Kinect-Camera System: A Proof-of-Concept Study
  
  Marcus D Souza, Christian Kamm, Jessica Burggraaff, Prejass Tewarie, Ben Glocker, Jonas Dorn, Thomas Vogel, Cecily Morrison, Abigail Sellen, Matthias Machacek, Peter Chin, Bernard Uitdehaag, Antonio Criminisi, Frank Dahlke, Chris Polman, Ludwig Kappos
  
  American Academy of Neurology Annual Meeting (AAN) | April 2014
  
  Publication Project Project
- Image Quality Transfer via Random Forest Regression: Applications in Diffusion MRI
  
  D. Alexander, Darko Zikic, H. Zhang, Antonio Criminisi
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014
  
  Publication Project
- Sparse Bayesian Registration
  
  L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014
  
  Publication Project
- Recognizing Cardiac Magnetic Resonance Acquisition Planes
  
  J. Margeta, Antonio Criminisi, D. C. Lee, N. Ayache
  
  MIUA 2014 – Medical Image Understanding and Analysis | January 2014
  
  Publication Project
- Laplacian Forests: Semantic Image Segmentation by Guided Bagging
  
  H. Lombaert, D. Zikic, Antonio Criminisi, N. Ayache, Darko Zikic
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014
  
  Publication Project
- Real-Time RGB-D Camera Relocalization
  
  Ben Glocker, Shahram Izadi, Jamie Shotton, Antonio Criminisi
  
  International Symposium on Mixed and Augmented Reality (ISMAR) | October 2013
  
  Publication Project Project Project
- Atlas Encoding by Randomized Forests for Efficient Label Propagation
  
  Darko Zikic, Ben Glocker, Antonio Criminisi
  
  MICCAI 2013 – 16th Intl Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI Young Scientist Award) | September 2013
  
  MICCAI 2013 – 16th Intl Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI Young Scientist Award)
  
  Publication
- Modality Propagation: Coherent Synthesis of Subject-Specific Scans with Data-Driven Regularization
  
  D. Ye, Darko Zikic, Ben Glocker, Antonio Criminisi, E. Konukoglu
  
  MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2013
  
  MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention
  
  Publication
- Vertebrae Localization in Pathological Spine CT via Dense Classification from Sparse Annotations
  
  Ben Glocker, Darko Zikic, Ender Konukoglu, David R. Haynor, Antonio Criminisi
  
  MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2013
  
  Publication Publication
- GeoF: Geodesic Forests for Learning Coupled Predictors
  
  P. Kontschieder, Pushmeet Kohli, Jamie Shotton, Antonio Criminisi
  
  Computer Vision and Pattern Recognition (CVPR), 2013 IEEE Conference on | June 2013
  
  ISBN: 978-0-7695-4989-7
  
  Publication Publication Project
- Decision Forests for Computer Vision and Medical Image Analysis
  
  A. Criminisi, J. Shotton, Antonio Criminisi, Jamie Shotton
  
  Published by Springer | February 2013
  
  ISBN: 978-1-4471-4928-6
  
  http://research.microsoft.com/en-us/projects/decisionforests/
  
  Publication Project Project
- Regression Forests for Efficient Anatomy Detection and Localization in Computed Tomography Scans
  
  Antonio Criminisi, Duncan Robertson, Ender Konukoglu, Jamie Shotton, S. Pathak, S. White, K. Siddiqui
  
  Medical Image Analysis (MedIA) | January 2013
  
  Publication Publication Project
- WESD – Weighted Spectral Distance for Measuring Shape Dissimilarity
  
  Ender Konukoglu, Ben Glocker, Antonio Criminisi, Kilian M. Pohl
  
  Transactions Pattern Analysis and Machine Intelligence (PAMI) | January 2013
  
  Publication
- Classification Forests for Semantic Segmentation of Brain Lesions in Multi-Channel MRI
  
  E. Geremia, D. Zikic, E. Konukoglu, O.M. Thomas, S.J. Price, T. Das, R. Jena, N. Ayache, A. Criminisi, O. Clatz, B.H. Menze, B. Glocker, J. Shotton, Darko Zikic, Jamie Shotton, Ben Glocker, Antonio Criminisi
  
  Decision Forests for Computer Vision and Medical Image Analysis | Published by Springer | 2013 | Decision Forests for Computer Vision and Medical Image Analysis edition
  
  Publication
- Neighbourhood Approximation using Randomized Forests
  
  Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi
  
  Medical Image Analysis (Medical Image Analysis – MICCAI 2013 Best Paper Award) | January 2013
  
  Publication Project
- Context-Sensitive Decision Forests for Object Detection
  
  Peter Kontschieder, Samuel Rota Bulo, Antonio Criminisi, Pushmeet Kohli, Marcello Pelillo, Horst Bischof
  
  NIPS’12 Proceedings of the 25th International Conference on Neural Information Processing Systems | December 2012
  
  Neural Information Processing Systems (NIPS)
  
  Publication Project
- Discriminative Segmentation-based Evaluation through Shape Dissimilarity
  
  Ben Glocker, Antonio Criminisi
  
  Transactions on Medical Imaging (TMI) | December 2012
  
  Publication
- Immediate ROI Search for 3D Medical Images
  
  K. Simonyan, M. Modat, S. Ourselin, A. Criminisi, A. Zisserman, Antonio Criminisi
  
  MICCAI workshop on Medical Content-based Retrieval for Clinical Decision Support (MCBR-CDS) | October 2012
  
  Publication
- Neighbourhood Approximation Forests
  
  Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012
  
  Publication Publication Project
- Joint Classification-Regression Forests for Spatially Structured Multi-Object Segmentation
  
  Ben Glocker, Olivier Pauly, Ender Konukoglu, Antonio Criminisi
  
  ECCV 2012 – 12th European Conference on Computer Vision | October 2012
  
  Publication Publication Project
- Decision Forests for Tissue-specific Segmentation of High-grade Gliomas in Multi-channel MR
  
  Antonio Criminisi, Darko Zikic, Ender Konukoglu, Ben Glocker, Jamie Shotton
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012
  
  Publication Publication Project
- Current-based 4D shape analysis for the mechanical personalization of heart models
  
  L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache
  
  MICCAI workshop on Medical Computer Vision (MCV) | October 2012
  
  MICCAI workshop on Medical Computer Vision (MCV)
  
  Publication
- Context-sensitive Classification Forests for Segmentation of Brain Tumor Tissues
  
  Antonio Criminisi, Darko Zikic, Ben Glocker, Jamie Shotton
  
  MICCAI 2012 Challenge on Multimodal Brain Tumor Segmentation | October 2012
  
  Publication
- Brain tumor cell density estimation from multi-modal MR images based on a synthetic tumor growth model
  
  E. Geremia, B. Menze, M. Prastawa, M.-A. Weber, Antonio Criminisi, N. Ayache
  
  MICCAI workshop on Medical Computer Vision (MCV) | October 2012
  
  Publication Project
- Automatic Localization and Identification of Vertebrae in Arbitrary Field-of-View CT Scans
  
  Ben Glocker, J. Feulner, Antonio Criminisi, D. R. Haynor, Ender Konukoglu
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention
  
  The pdf is a modified version of the original publication. Typos in Eq. 1 and 3 have been corrected.
  
  Publication Publication Project
- Layered Spatio-Temporal Forests for Left Ventricle Segmentation from 4D Cardiac MRI Data
  
  J. Margeta, E. Geremia, A. Criminisi, N. Ayache, Antonio Criminisi
  
  MICCAI workshop: Statistical Atlases and Computational Models of the Heart (STACOM) | September 2012
  
  Publication Project
- Comparative Analysis of Semantic Localization Accuracies Between Adult and Pediatric DICOM CT Images
  
  Duncan Robertson, Sayan D. Pathak, Antonio Criminisi, Steve White, David Haynor, Oliver Chen, Khan Siddiqui
  
  SPIE Medical Imaging | January 2012
  
  Publication Project
- Decision Forests: A Unified Framework for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning
  
  Antonio Criminisi, Jamie Shotton, Ender Konukoglu
  
  Foundations and Trends® in Computer Graphics and Vision | Published by NOW Publishers | 2012, Vol 7 | Foundations and Trends® in Computer Graphics and Vision: Vol. 7: No 2-3, pp 81-227 edition
  
  Publication Project Project
- Linking DICOM Pixel Data with Radiology Reports Using Automatic Semantic Annotation
  
  Sayan D. Pathak, Woojin Kim, Indeera Munasinghe, Antonio Criminisi, Steve White, Khan Siddiqui
  
  SPIE Medical Imaging | January 2012
  
  Publication Project
- Decision Forests for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning
  
  Antonio Criminisi, Ender Konukoglu, Jamie Shotton
  
  MSR-TR-2011-114 | October 2011
  
  Publication Project
- Immediate Structured Image Search for Medical Images
  
  Antonio Criminisi, A. Zisserman, K. Simonyan
  
  MICCAI | September 2011
  
  Publication
- Fast Multiple Organs Detection and Localization in Whole-Body MR Dixon Sequences
  
  O. Pauly, B. Glocker, A. Criminisi, N. Navab, D. Mateus, A. Martinez Moller, S. Nekolla, Antonio Criminisi, Ben Glocker
  
  MICCAI 2011 – 14th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2011
  
  Publication Project
- A Discriminative-Generative Model for Detecting Intravenous Contrast in CT Images
  
  Antonio Criminisi, K. Juluru, S. Pathak
  
  MICCAI | September 2011
  
  Publication Project
- Combining Generative and Discriminative Models for Semantic Segmentation of CT Scans via Active learning
  
  A. Montillo, Z. Tu, Antonio Criminisi, J. E. Iglesias, E. Konukoglu, Ender Konukoglu
  
  Information Processing in Medical Imaging (IPMI) | July 2011
  
  Germany
  
  Publication Project
- Entangled Decision Forests and their Application for Semantic Segmentation of CT Images
  
  A. Montillo, J. E. Iglesias, John Winn, Antonio Criminisi, D. Metaxas, Jamie Shotton
  
  Information Processing in Medical Imaging (IPMI) | July 2011
  
  Information Processing in Medical Imaging (IPMI)
  
  Bavaria, Germany
  
  Publication Project
- Exploring the potential for touchless interaction in image-guided interventional radiology
  
  Kenton O'Hara, Abigail Sellen, Antonio Criminisi
  
  Proceedings of CHI 2011 | May 2011
  
  Honourable Mention, Best of CHI Awards
  
  Publication Project Project
- Automatic Semantic Annotation and Validation of Anatomy in DICOM CT Images
  
  S. Pathak, Antonio Criminisi, S. White, I. Munasinghe, B. Sparks, D. Robertson, K. Siddiqui
  
  SPIE Medical Imaging | February 2011
  
  Publication
- Medical Computer Vision: recognition techniques and applications in medical imaging (1st MICCAI-MCV workshop)
  
  B. Menze, G. Langs, Z. Tu, A. Criminisi, Antonio Criminisi
  
  Published by Springer, February 2011
  
  Workshop held in conjunction with MICCAI 2010, Beijing, China.
  
  Publication
- Robust Linear Registration of CT Images using Random Regression Forests
  
  Ender Konukoglu, Antonio Criminisi, Sayan Pathak, Duncan Robertson, Steve White, David Haynor, Khan Siddiqui
  
  SPIE Medical Imaging | February 2011
  
  Publication Publication Project
- Mobile Cloud-Computer-aided Diagnosis System for Colon Cancer Screening with Motion-based Virtual Colonoscopic Navigation
  
  H. Yoshida, Y. Wu, W. Cai, J. J. Nappi, M. Hirano, A. Criminisi, Antonio Criminisi
  
  Radiological Society of North America (RSNA) | January 2011
  
  Radiological Society of North America (RSNA)
  
  Publication
- Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel Magnetic Resonance
  
  E. Geremia, O. Clatz, B. H. Menze, E. Konukoglu, A. Criminisi, N. Ayache, Antonio Criminisi
  
  NeuroImage | January 2011
  
  Publication Project
- Regression Forests for Efficient Anatomy Detection and Localization in CT Studies
  
  Antonio Criminisi, Jamie Shotton, D. Robertson, Ender Konukoglu
  
  Medical Computer Vision 2010: Recognition Techniques and Applications in Medical Imaging, MICCAI workshop | September 2010
  
  Publication Publication Project
- Anatomy-Driven Medical Image Search
  
  K. Simonyan, A. Zisserman, A. Criminisi, Antonio Criminisi
  
  Radiological Society of North America (RSNA) | January 2010
  
  Publication
- Automatic Semantic Segmentation of Anatomical Structures in CT Scans
  
  Antonio Criminisi, A. Montillo, Jamie Shotton, S. Pathak, John Winn, K. Siddiqui
  
  Radiological Society of North America (RSNA) | January 2010
  
  Publication Project
- Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images
  
  Ezequiel Geremia, Bjoern H. Menze, Oilivierr Clatz, Ender Konukoglu, Antonio Criminisi, Nicholas Ayache
  
  MICCAI | January 2010
  
  Publication Publication Project
- Automatic Semantic Parsing of CT Scans via Multiple Randomized Decision Trees
  
  Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli, Khan Siddiqui
  
  Radiological Society of North America (RSNA) | December 2009
  
  Publication Publication Project Project
- Interactive Geodesic Segmentation of n-Dimensional Medical Images on the Graphics Processor
  
  Antonio Criminisi, Toby Sharp, Khan Siddiqui
  
  Radiological Society of North America (RSNA) | December 2009
  
  Publication Publication
- Random Forest Classification for Automatic Delineation of Myocardium in Real-time 3D Echocardiography
  
  Victor Lempitsky, Michael Veroek, Alison Noble, Andrew Blake
  
  FIMH 2009 [best paper award] | June 2009
  
  best paper award
  
  Publication Project
- Surface Extraction from Binary Volumes with Higher-Order Smoothness
  
  Victor Lempitsky
  
  MSR-TR-2009-31 | March 2009
  
  Publication
- Decision Forests with Long-Range Spatial Context for Organ Localization in CT Volumes
  
  Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli
  
  MICCAI workshop on Probabilistic Models for Medical Image Analysis (MICCAI-PMMIA) | January 2009
  
  Publication Publication Project Project
- GeoS: Geodesic Image Segmentation
  
  Antonio Criminisi, Toby Sharp, Andrew Blake
  
  Proc. European Conference on Computer Vision (ECCV) | January 2008
  
  ISBN: 978-3-540-88681-5
  
  Publication Publication Publication
- Active label cleaning for improved dataset quality under resource constraints
  
  Melanie Bernhardt, Daniel Coelho de Castro, Ryutaro Tanno, Anton Schwaighofer, Kerem C. Tezcan, Miguel Monteiro, Shruthi Bannur, Matthew P. Lungren, Aditya Nori, Ben Glocker, Javier Alvarez-Valle, Ozan Oktay
  
  Nature Communications | March 2022, Vol 13(1161): pp. 1-11
  
  Publication Github Project
- Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs
  
  Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro
  
  ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021
  
  PDF Preprint Project Project Project
- Addressing the Exorbitant Cost of Labeling Medical Images with Active Learning
  
  Saba Rahimi, Ozan Oktay, Javier Alvarez-Valle, Sujeeth Bharadwaj
  
  International Conference on Machine Learning in Medical Imaging and Analysis | June 2021
  
  Best Presentation Award
  
  Publication
- Deep Learning with Mixed Supervision for Brain Tumor Segmentation
  
  Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache
  
  December 2018
  
  Publication
- Image Quality Transfer and Applications in Diffusion MRI
  
  Daniel C. Alexander, Darko Zikic, Aurobrata Gosh, Ryutaro Tanno, Viktor Wottschel, Jiaying Zhang, Enrico Kaden, Tim B. Dirby, Stamatios N. Sotiropoulos, Hui Zhang, Antonio Criminisi
  
  Neuroimage | March 2017
  
  Publication
- Sparse Bayesian registration of medical images for self-tuning of parameters and spatially adaptive parametrization of displacements.
  
  Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache
  
  Medical Image Analysis | January 2017, Vol 36: pp. 79-97
  
  PDF DOI
- Quantifying Registration Uncertainty with Sparse Bayesian Modeling
  
  Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache
  
  IEEE Transactions on Medical Imaging | December 2016
  
  Publication
- Generalisability of Image Quality Transfer: Can we approximate in-vivo human brains from dead monkey brains?
  
  Aurobrata Ghosh, V. Wottschel, Enrico Kaden, H. Zhang, Stamatios N. Sotiropoulos, D. Zikic, T. B. Dyrby, Antonio Criminisi, Daniel C. Alexander
  
  April 2016
  
  Publication Project
- Decision Forests, Convolutional Networks and the Models in-Between
  
  Yani Ioannou, Duncan Robertson, D. Zikic, Peter Kontschieder, Jamie Shotton, Matthew Brown, Antonio Criminisi
  
  March 2016
  
  DOI Publication Project
- Assessing Multiple Sclerosis with Kinect: Designing Computer Vision Systems for Real-World Use
  
  Cecily Morrison, Kit Huckvale, Bob Corish, Jonas Dorn, Peter Kontschieder, Kenton O'Hara, ASSESS MS Team, Antonio Criminisi, Abigail Sellen
  
  Human-Computer Interaction | January 2016
  
  Publication Publication Project
- Improving Indoor Mobility of the Visually Impaired with Depth-Based Spatial Sound
  
  Simon Blessenohl, Cecily Morrison, Antonio Criminisi, Jamie Shotton
  
  ICCV-ACVR workshop | December 2015
  
  DOI PDF PDF Publication
- Spectral Forests: Learning of Surface Data, Application to Cortical Parcellation
  
  Herve Lombaert, Antonio Criminisi, Nicholas Ayache
  
  Medical Image Computing and Computer Assisted Intervention (MICCAI) | October 2015
  
  DOI PDF Publication Project
- Prediction of expanded disability status scale subscores of motor dysfunction in multiple sclerosis using depth-sensing computer vision
  
  M. D'Souza, J. Burggraaff, P. Kontschieder, J. Dorn, C.P. Kamm, S. Seinheimer, P. Tewarie, C. Morrison, Abigail Sellen, Antonio Criminisi, F. Dahlke, B Uitdehaag, L. Kappos
  
  Multiple Sclerosis Journal | October 2015, Vol 21: pp. 409-409
  
  Publication
- The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)
  
  Bjoern H. Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth Gerstner, Marc-Andre Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Hervé Delingette, Cagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, Jose Antonio Mariz, Raphael Meier, Sergio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael Ryan, Duygu Sarikaya, Lawrence Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno Sousa, Nagesh K. Subbanna, Gabor Szekely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gozde Unal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, D. Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput
  
  IEEE Transactions on Medical Imaging | September 2015, Vol 34(10): pp. 1993-2024
  
  DOI PDF PDF
- Video-based paired-comparison ranking: a validation tool for fine-grained measurements of motor dysfunction in multiple sclerosis
  
  J. Burggraaff, J. Dorn, M. D'Souza, C. P. Kamm, P. Tewarie, P. Kontschieder, Cecily Morrison, A. Criminisi, F. Dahlke, L. Kappos, B. M. J. Uitdehaag, Antonio Criminisi , Abigail Sellen
  
  Multiple Sclerosis Journal | September 2015, Vol 21: pp. 127-128
  
  Publication
- Finetuned convolutional neural nets for cardiac MRI acquisition plane recognition
  
  J. Margeta, Antonio Criminisi, R. Cabrera Lozoya, D. C. Lee, N. Ayache
  
  Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization | June 2015
  
  Publication Publication
- Touchless interaction in surgical settings
  
  Tom Carrell, Helena Mentis, Graeme Penney, Antonio Criminisi, Kenton O'Hara, Abigail Sellen, Mark Rouncefield, Neville Dastur, Varnavas, Bob Corish
  
  Communications of the ACM | December 2014
  
  Publication Video Project
- Decision Forests for Segmentation of Left Atrium From 3D MRI
  
  J. Margeta, K. McLeod, Antonio Criminisi, N. Ayache
  
  MICCAI Workshop on Statistical Atlases and Computational Models of the Heart (STACOM) | October 2014
  
  Publication Project
- Classifier-Based Multi-atlas Label Propagation with Test-Specific Atlas Weighting for Correspondence-Free Scenarios
  
  Darko Zikic, Ben Glocker, Antonio Criminisi
  
  MICCAI Workshop on Medical Computer Vision: Algorithms for Big Data (bigMCV) | September 2014
  
  PDF DOI Publication
- Quantifying Progression of Multiple Sclerosis via Classification of Depth Videos
  
  Peter Kontschieder, Jonas F. Dorn, Cecily Morrison, Bob Corish, Darko Zikic, Abigail Sellen, Marcus DSouza, Christian P. Kamm, Jessica Burggraaff, Prejaas Tewarie, Thomas Vogel, Michael Azzarito, Ben Glocker, Peter Chin, Frank Dahlke, Chris Polman, Ludwig Kappos, Bernard Uitdehaag, Antonio Criminisi
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | September 2014
  
  Publication Project
- Video-based paired-comparison ranking: A validation tool for fine grained measures of motor dysfunction in multiple sclerosis
  
  Burggraaf J, D Souza M, Dorn J, Kamm C, Tewarie P, Kontschieder P, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Kappos L, Uitdehaag B
  
  European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) | September 2014
  
  Publication Project
- Infrared depth sensor based automated classification of motor dysfunction in multiple sclerosis – a proof-of-concept study
  
  Burggraaf J, Kamm C, Tewarie P, Peter Kontschieder, Dorn J, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Uitdehaag B, Kappos L
  
  August 2014
  
  Publication Project
- Encoding Atlases by Randomized Classification Forests for Efficient Multi-Atlas Label Propagation
  
  Darko Zikic, B. Glocker, Antonio Criminisi
  
  Medical Image Analysis | June 2014
  
  Publication
- Assessment of Disability in Multiple Sclerosis Using the Kinect-Camera System: A Proof-of-Concept Study
  
  Marcus D Souza, Christian Kamm, Jessica Burggraaff, Prejass Tewarie, Ben Glocker, Jonas Dorn, Thomas Vogel, Cecily Morrison, Abigail Sellen, Matthias Machacek, Peter Chin, Bernard Uitdehaag, Antonio Criminisi, Frank Dahlke, Chris Polman, Ludwig Kappos
  
  American Academy of Neurology Annual Meeting (AAN) | April 2014
  
  Publication Project Project
- Image Quality Transfer via Random Forest Regression: Applications in Diffusion MRI
  
  D. Alexander, Darko Zikic, H. Zhang, Antonio Criminisi
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014
  
  Publication Project
- Sparse Bayesian Registration
  
  L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014
  
  Publication Project
- Recognizing Cardiac Magnetic Resonance Acquisition Planes
  
  J. Margeta, Antonio Criminisi, D. C. Lee, N. Ayache
  
  MIUA 2014 – Medical Image Understanding and Analysis | January 2014
  
  Publication Project
- Laplacian Forests: Semantic Image Segmentation by Guided Bagging
  
  H. Lombaert, D. Zikic, Antonio Criminisi, N. Ayache, Darko Zikic
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014
  
  Publication Project
- Real-Time RGB-D Camera Relocalization
  
  Ben Glocker, Shahram Izadi, Jamie Shotton, Antonio Criminisi
  
  International Symposium on Mixed and Augmented Reality (ISMAR) | October 2013
  
  Publication Project Project Project
- GeoF: Geodesic Forests for Learning Coupled Predictors
  
  P. Kontschieder, Pushmeet Kohli, Jamie Shotton, Antonio Criminisi
  
  Computer Vision and Pattern Recognition (CVPR), 2013 IEEE Conference on | June 2013
  
  ISBN: 978-0-7695-4989-7
  
  Publication Publication Project
- Regression Forests for Efficient Anatomy Detection and Localization in Computed Tomography Scans
  
  Antonio Criminisi, Duncan Robertson, Ender Konukoglu, Jamie Shotton, S. Pathak, S. White, K. Siddiqui
  
  Medical Image Analysis (MedIA) | January 2013
  
  Publication Publication Project
- Context-Sensitive Decision Forests for Object Detection
  
  Peter Kontschieder, Samuel Rota Bulo, Antonio Criminisi, Pushmeet Kohli, Marcello Pelillo, Horst Bischof
  
  NIPS’12 Proceedings of the 25th International Conference on Neural Information Processing Systems | December 2012
  
  Neural Information Processing Systems (NIPS)
  
  Publication Project
- Decision Forests for Tissue-specific Segmentation of High-grade Gliomas in Multi-channel MR
  
  Antonio Criminisi, Darko Zikic, Ender Konukoglu, Ben Glocker, Jamie Shotton
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012
  
  Publication Publication Project
- Context-sensitive Classification Forests for Segmentation of Brain Tumor Tissues
  
  Antonio Criminisi, Darko Zikic, Ben Glocker, Jamie Shotton
  
  MICCAI 2012 Challenge on Multimodal Brain Tumor Segmentation | October 2012
  
  Publication
- Decision Forests: A Unified Framework for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning
  
  Antonio Criminisi, Jamie Shotton, Ender Konukoglu
  
  Foundations and Trends® in Computer Graphics and Vision | Published by NOW Publishers | 2012, Vol 7 | Foundations and Trends® in Computer Graphics and Vision: Vol. 7: No 2-3, pp 81-227 edition
  
  Publication Project Project
- Decision Forests for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning
  
  Antonio Criminisi, Ender Konukoglu, Jamie Shotton
  
  MSR-TR-2011-114 | October 2011
  
  Publication Project
- Entangled Decision Forests and their Application for Semantic Segmentation of CT Images
  
  A. Montillo, J. E. Iglesias, John Winn, Antonio Criminisi, D. Metaxas, Jamie Shotton
  
  Information Processing in Medical Imaging (IPMI) | July 2011
  
  Information Processing in Medical Imaging (IPMI)
  
  Bavaria, Germany
  
  Publication Project
- Regression Forests for Efficient Anatomy Detection and Localization in CT Studies
  
  Antonio Criminisi, Jamie Shotton, D. Robertson, Ender Konukoglu
  
  Medical Computer Vision 2010: Recognition Techniques and Applications in Medical Imaging, MICCAI workshop | September 2010
  
  Publication Publication Project
- Automatic Semantic Segmentation of Anatomical Structures in CT Scans
  
  Antonio Criminisi, A. Montillo, Jamie Shotton, S. Pathak, John Winn, K. Siddiqui
  
  Radiological Society of North America (RSNA) | January 2010
  
  Publication Project
- Automatic Semantic Parsing of CT Scans via Multiple Randomized Decision Trees
  
  Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli, Khan Siddiqui
  
  Radiological Society of North America (RSNA) | December 2009
  
  Publication Publication Project Project
- Interactive Geodesic Segmentation of n-Dimensional Medical Images on the Graphics Processor
  
  Antonio Criminisi, Toby Sharp, Khan Siddiqui
  
  Radiological Society of North America (RSNA) | December 2009
  
  Publication Publication
- Decision Forests with Long-Range Spatial Context for Organ Localization in CT Volumes
  
  Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli
  
  MICCAI workshop on Probabilistic Models for Medical Image Analysis (MICCAI-PMMIA) | January 2009
  
  Publication Publication Project Project
- Discriminative, Semantic Segmentation of Brain Tissue in MR Images
  
  Zhao Yi, Antonio Criminisi, Jamie Shotton, Andrew Blake
  
  MICCAI 2009 | January 2009
  
  MICCAI 2009
  
  Publication Project
- GeoS: Geodesic Image Segmentation
  
  Antonio Criminisi, Toby Sharp, Andrew Blake
  
  Proc. European Conference on Computer Vision (ECCV) | January 2008
  
  ISBN: 978-3-540-88681-5
  
  Publication Publication Publication
- Secure Medical Image Analysis with CrypTFlow
  
  Javier Alvarez-Valle, Pratik Bhatu, Nishanth Chandran, Divya Gupta, Aditya Nori, Aseem Rastogi, Mayank Rathee, Rahul Sharma, Shubham Ugare
  
  NeurIPS PPML Workshop | December 2020
  
  Publication Project
- Secure Medical Image Analysis with CrypTFlow
  
  Javier Alvarez-Valle, Pratik Bhatu, Nishanth Chandran, Divya Gupta, Aditya Nori, Aseem Rastogi, Mayank Rathee, Rahul Sharma, Shubham Ugare
  
  NeurIPS PPML Workshop | December 2020
  
  Publication Project
- Assessing Multiple Sclerosis with Kinect: Designing Computer Vision Systems for Real-World Use
  
  Cecily Morrison, Kit Huckvale, Bob Corish, Jonas Dorn, Peter Kontschieder, Kenton O'Hara, ASSESS MS Team, Antonio Criminisi, Abigail Sellen
  
  Human-Computer Interaction | January 2016
  
  Publication Publication Project
- Prediction of expanded disability status scale subscores of motor dysfunction in multiple sclerosis using depth-sensing computer vision
  
  M. D'Souza, J. Burggraaff, P. Kontschieder, J. Dorn, C.P. Kamm, S. Seinheimer, P. Tewarie, C. Morrison, Abigail Sellen, Antonio Criminisi, F. Dahlke, B Uitdehaag, L. Kappos
  
  Multiple Sclerosis Journal | October 2015, Vol 21: pp. 409-409
  
  Publication
- Video-based paired-comparison ranking: a validation tool for fine-grained measurements of motor dysfunction in multiple sclerosis
  
  J. Burggraaff, J. Dorn, M. D'Souza, C. P. Kamm, P. Tewarie, P. Kontschieder, Cecily Morrison, A. Criminisi, F. Dahlke, L. Kappos, B. M. J. Uitdehaag, Antonio Criminisi , Abigail Sellen
  
  Multiple Sclerosis Journal | September 2015, Vol 21: pp. 127-128
  
  Publication
- Touchless interaction in surgical settings
  
  Tom Carrell, Helena Mentis, Graeme Penney, Antonio Criminisi, Kenton O'Hara, Abigail Sellen, Mark Rouncefield, Neville Dastur, Varnavas, Bob Corish
  
  Communications of the ACM | December 2014
  
  Publication Video Project
- Quantifying Progression of Multiple Sclerosis via Classification of Depth Videos
  
  Peter Kontschieder, Jonas F. Dorn, Cecily Morrison, Bob Corish, Darko Zikic, Abigail Sellen, Marcus DSouza, Christian P. Kamm, Jessica Burggraaff, Prejaas Tewarie, Thomas Vogel, Michael Azzarito, Ben Glocker, Peter Chin, Frank Dahlke, Chris Polman, Ludwig Kappos, Bernard Uitdehaag, Antonio Criminisi
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | September 2014
  
  Publication Project
- Infrared depth sensor based automated classification of motor dysfunction in multiple sclerosis – a proof-of-concept study
  
  Burggraaf J, Kamm C, Tewarie P, Peter Kontschieder, Dorn J, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Uitdehaag B, Kappos L
  
  August 2014
  
  Publication Project
- Assessment of Disability in Multiple Sclerosis Using the Kinect-Camera System: A Proof-of-Concept Study
  
  Marcus D Souza, Christian Kamm, Jessica Burggraaff, Prejass Tewarie, Ben Glocker, Jonas Dorn, Thomas Vogel, Cecily Morrison, Abigail Sellen, Matthias Machacek, Peter Chin, Bernard Uitdehaag, Antonio Criminisi, Frank Dahlke, Chris Polman, Ludwig Kappos
  
  American Academy of Neurology Annual Meeting (AAN) | April 2014
  
  Publication Project Project
- Exploring the potential for touchless interaction in image-guided interventional radiology
  
  Kenton O'Hara, Abigail Sellen, Antonio Criminisi
  
  Proceedings of CHI 2011 | May 2011
  
  Honourable Mention, Best of CHI Awards
  
  Publication Project Project
- Touchless interaction in surgical settings
  
  Tom Carrell, Helena Mentis, Graeme Penney, Antonio Criminisi, Kenton O'Hara, Abigail Sellen, Mark Rouncefield, Neville Dastur, Varnavas, Bob Corish
  
  Communications of the ACM | December 2014
  
  Publication Video Project
- Exploring the potential for touchless interaction in image-guided interventional radiology
  
  Kenton O'Hara, Abigail Sellen, Antonio Criminisi
  
  Proceedings of CHI 2011 | May 2011
  
  Honourable Mention, Best of CHI Awards
  
  Publication Project Project
- Volume Rendering on Server GPUs for Enterprise-Scale Medical Applications
  
  Toby Sharp, D. Robertson, Antonio Criminisi
  
  MSR-TR-2010-72 | June 2010
  
  Publication Access

- Active label cleaning for improved dataset quality under resource constraints
  
  Melanie Bernhardt, Daniel Coelho de Castro, Ryutaro Tanno, Anton Schwaighofer, Kerem C. Tezcan, Miguel Monteiro, Shruthi Bannur, Matthew P. Lungren, Aditya Nori, Ben Glocker, Javier Alvarez-Valle, Ozan Oktay
  
  Nature Communications | March 2022, Vol 13(1161): pp. 1-11
  
  Publication Github Project
- Machine Learning for Auto-Segmentation in Radiotherapy Planning
  
  K Harrison, H Pullen, C Welsh, Ozan Oktay, Javier Alvarez-Valle, R Jena
  
  The Royal College of Radiologists – Clinical Oncology | January 2022, Vol 34(2): pp. 74-88
  
  Publication Project
- Evaluation of Deep Learning to Augment Image Guided Radiotherapy for Head and Neck and Prostate Cancers
  
  Ozan Oktay, Jay Nanavati, Anton Schwaighofer, David Carter, Melissa Bristow, Ryutaro Tanno, Gill Barnett, David Noble, Yvonne Rimmer, Rajesh Jena, Ben Glocker, Kenton O'Hara, Christopher Bishop, Javier Alvarez-Valle, Aditya Nori
  
  JAMA | November 2020
  
  Publication Video Github
- 3D Convolutional Neural Networks for Tumor Segmentation using Long-range 2D Context
  
  Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache
  
  Computerized Medical Imaging and Graphics | February 2019
  
  Publication
- Autosegmentation of prostate anatomy for radiation treatment planning using deep decision forests of radiomic features
  
  Meghan W Macomber, Mark Phillips, Ivan Tarapov, Rajesh Jena, Aditya Nori, David Carter, Loic Le Folgoc, Antonio Criminisi, Matthew J Nyflot
  
  Physics in Medicine & Biology | November 2018, Vol 63(23)
  
  Publication
- Image Quality Transfer and Applications in Diffusion MRI
  
  Daniel C. Alexander, Darko Zikic, Aurobrata Gosh, Ryutaro Tanno, Viktor Wottschel, Jiaying Zhang, Enrico Kaden, Tim B. Dirby, Stamatios N. Sotiropoulos, Hui Zhang, Antonio Criminisi
  
  Neuroimage | March 2017
  
  Publication
- Sparse Bayesian registration of medical images for self-tuning of parameters and spatially adaptive parametrization of displacements.
  
  Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache
  
  Medical Image Analysis | January 2017, Vol 36: pp. 79-97
  
  PDF DOI
- Quantifying Registration Uncertainty with Sparse Bayesian Modeling
  
  Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache
  
  IEEE Transactions on Medical Imaging | December 2016
  
  Publication
- Assessing Multiple Sclerosis with Kinect: Designing Computer Vision Systems for Real-World Use
  
  Cecily Morrison, Kit Huckvale, Bob Corish, Jonas Dorn, Peter Kontschieder, Kenton O'Hara, ASSESS MS Team, Antonio Criminisi, Abigail Sellen
  
  Human-Computer Interaction | January 2016
  
  Publication Publication Project
- Prediction of expanded disability status scale subscores of motor dysfunction in multiple sclerosis using depth-sensing computer vision
  
  M. D'Souza, J. Burggraaff, P. Kontschieder, J. Dorn, C.P. Kamm, S. Seinheimer, P. Tewarie, C. Morrison, Abigail Sellen, Antonio Criminisi, F. Dahlke, B Uitdehaag, L. Kappos
  
  Multiple Sclerosis Journal | October 2015, Vol 21: pp. 409-409
  
  Publication
- The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)
  
  Bjoern H. Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth Gerstner, Marc-Andre Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Hervé Delingette, Cagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, Jose Antonio Mariz, Raphael Meier, Sergio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael Ryan, Duygu Sarikaya, Lawrence Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno Sousa, Nagesh K. Subbanna, Gabor Szekely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gozde Unal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, D. Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput
  
  IEEE Transactions on Medical Imaging | September 2015, Vol 34(10): pp. 1993-2024
  
  DOI PDF PDF
- Video-based paired-comparison ranking: a validation tool for fine-grained measurements of motor dysfunction in multiple sclerosis
  
  J. Burggraaff, J. Dorn, M. D'Souza, C. P. Kamm, P. Tewarie, P. Kontschieder, Cecily Morrison, A. Criminisi, F. Dahlke, L. Kappos, B. M. J. Uitdehaag, Antonio Criminisi , Abigail Sellen
  
  Multiple Sclerosis Journal | September 2015, Vol 21: pp. 127-128
  
  Publication
- Finetuned convolutional neural nets for cardiac MRI acquisition plane recognition
  
  J. Margeta, Antonio Criminisi, R. Cabrera Lozoya, D. C. Lee, N. Ayache
  
  Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization | June 2015
  
  Publication Publication
- Touchless interaction in surgical settings
  
  Tom Carrell, Helena Mentis, Graeme Penney, Antonio Criminisi, Kenton O'Hara, Abigail Sellen, Mark Rouncefield, Neville Dastur, Varnavas, Bob Corish
  
  Communications of the ACM | December 2014
  
  Publication Video Project
- Video-based paired-comparison ranking: A validation tool for fine grained measures of motor dysfunction in multiple sclerosis
  
  Burggraaf J, D Souza M, Dorn J, Kamm C, Tewarie P, Kontschieder P, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Kappos L, Uitdehaag B
  
  European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) | September 2014
  
  Publication Project
- Encoding Atlases by Randomized Classification Forests for Efficient Multi-Atlas Label Propagation
  
  Darko Zikic, B. Glocker, Antonio Criminisi
  
  Medical Image Analysis | June 2014
  
  Publication
- Regression Forests for Efficient Anatomy Detection and Localization in Computed Tomography Scans
  
  Antonio Criminisi, Duncan Robertson, Ender Konukoglu, Jamie Shotton, S. Pathak, S. White, K. Siddiqui
  
  Medical Image Analysis (MedIA) | January 2013
  
  Publication Publication Project
- WESD – Weighted Spectral Distance for Measuring Shape Dissimilarity
  
  Ender Konukoglu, Ben Glocker, Antonio Criminisi, Kilian M. Pohl
  
  Transactions Pattern Analysis and Machine Intelligence (PAMI) | January 2013
  
  Publication
- Discriminative Segmentation-based Evaluation through Shape Dissimilarity
  
  Ben Glocker, Antonio Criminisi
  
  Transactions on Medical Imaging (TMI) | December 2012
  
  Publication
- Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel Magnetic Resonance
  
  E. Geremia, O. Clatz, B. H. Menze, E. Konukoglu, A. Criminisi, N. Ayache, Antonio Criminisi
  
  NeuroImage | January 2011
  
  Publication Project
- Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs
  
  Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro
  
  ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021
  
  PDF Preprint Project Project Project
- Addressing the Exorbitant Cost of Labeling Medical Images with Active Learning
  
  Saba Rahimi, Ozan Oktay, Javier Alvarez-Valle, Sujeeth Bharadwaj
  
  International Conference on Machine Learning in Medical Imaging and Analysis | June 2021
  
  Best Presentation Award
  
  Publication
- Secure Medical Image Analysis with CrypTFlow
  
  Javier Alvarez-Valle, Pratik Bhatu, Nishanth Chandran, Divya Gupta, Aditya Nori, Aseem Rastogi, Mayank Rathee, Rahul Sharma, Shubham Ugare
  
  NeurIPS PPML Workshop | December 2020
  
  Publication Project
- Autofocus Layer for Semantic Segmentation
  
  Yao Qin, Konstantinos Kamnitsas, Siddharth Ancha, Jay Nanavati, Garrison W. Cottrell, Antonio Criminisi, Aditya Nori
  
  International Conference on Medical Image Computing & Computer Assisted Intervention (MICCAI) | September 2018
  
  DOI Publication
- Semi-Supervised Learning via Compact Latent Space Clustering
  
  Konstantinos Kamnitsas, Daniel C. Castro, Loic Le Folgoc, Ian Walker, Ryutaro Tanno, Daniel Rueckert, Ben Glocker, Antonio Criminisi, Aditya Nori
  
  International Conference on Machine Learning (ICML) | June 2018
  
  Publication Publication
- Unsupervised domain adaptation in brain lesion segmentation with adversarial networks
  
  Konstantinos Kamnitsas, Christian Baumgartner, Christian Ledig, Virginia F.J. Newcombe, Joanna P. Simpson, Andrew D. Kane, David K. Menon, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker
  
  Information Processing in Medical Imaging (IPMI) | June 2017
  
  Publication
- Spectral Kernels for Probabilistic Analysis and Clustering of Shapes
  
  Loic Le Folgoc, Aditya Nori, Antonio Criminisi
  
  Information Processing in Medical Imaging (IPMI) | June 2017
  
  DOI PDF Publication
- Lifted Auto-Context Forests for Brain Tumour Segmentation
  
  Loic Le Folgoc, Aditya Nori, Siddharth Ancha, Antonio Criminisi
  
  MICCAI Brain Lesion Workshop | October 2016
  
  DOI PDF Publication
- DeepMedic for Brain Tumor Segmentation
  
  Konstantinos Kamnitsas, Enzo Ferrante, Sarah Parisot, Christian Ledig, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker
  
  MICCAI Brain Lesion Workshop | October 2016
  
  DOI PDF Publication
- Improving Indoor Mobility of the Visually Impaired with Depth-Based Spatial Sound
  
  Simon Blessenohl, Cecily Morrison, Antonio Criminisi, Jamie Shotton
  
  ICCV-ACVR workshop | December 2015
  
  DOI PDF PDF Publication
- Spectral Forests: Learning of Surface Data, Application to Cortical Parcellation
  
  Herve Lombaert, Antonio Criminisi, Nicholas Ayache
  
  Medical Image Computing and Computer Assisted Intervention (MICCAI) | October 2015
  
  DOI PDF Publication Project
- Decision Forests for Segmentation of Left Atrium From 3D MRI
  
  J. Margeta, K. McLeod, Antonio Criminisi, N. Ayache
  
  MICCAI Workshop on Statistical Atlases and Computational Models of the Heart (STACOM) | October 2014
  
  Publication Project
- Classifier-Based Multi-atlas Label Propagation with Test-Specific Atlas Weighting for Correspondence-Free Scenarios
  
  Darko Zikic, Ben Glocker, Antonio Criminisi
  
  MICCAI Workshop on Medical Computer Vision: Algorithms for Big Data (bigMCV) | September 2014
  
  PDF DOI Publication
- Quantifying Progression of Multiple Sclerosis via Classification of Depth Videos
  
  Peter Kontschieder, Jonas F. Dorn, Cecily Morrison, Bob Corish, Darko Zikic, Abigail Sellen, Marcus DSouza, Christian P. Kamm, Jessica Burggraaff, Prejaas Tewarie, Thomas Vogel, Michael Azzarito, Ben Glocker, Peter Chin, Frank Dahlke, Chris Polman, Ludwig Kappos, Bernard Uitdehaag, Antonio Criminisi
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | September 2014
  
  Publication Project
- Assessment of Disability in Multiple Sclerosis Using the Kinect-Camera System: A Proof-of-Concept Study
  
  Marcus D Souza, Christian Kamm, Jessica Burggraaff, Prejass Tewarie, Ben Glocker, Jonas Dorn, Thomas Vogel, Cecily Morrison, Abigail Sellen, Matthias Machacek, Peter Chin, Bernard Uitdehaag, Antonio Criminisi, Frank Dahlke, Chris Polman, Ludwig Kappos
  
  American Academy of Neurology Annual Meeting (AAN) | April 2014
  
  Publication Project Project
- Image Quality Transfer via Random Forest Regression: Applications in Diffusion MRI
  
  D. Alexander, Darko Zikic, H. Zhang, Antonio Criminisi
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014
  
  Publication Project
- Sparse Bayesian Registration
  
  L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014
  
  Publication Project
- Recognizing Cardiac Magnetic Resonance Acquisition Planes
  
  J. Margeta, Antonio Criminisi, D. C. Lee, N. Ayache
  
  MIUA 2014 – Medical Image Understanding and Analysis | January 2014
  
  Publication Project
- Laplacian Forests: Semantic Image Segmentation by Guided Bagging
  
  H. Lombaert, D. Zikic, Antonio Criminisi, N. Ayache, Darko Zikic
  
  MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014
  
  Publication Project
- Real-Time RGB-D Camera Relocalization
  
  Ben Glocker, Shahram Izadi, Jamie Shotton, Antonio Criminisi
  
  International Symposium on Mixed and Augmented Reality (ISMAR) | October 2013
  
  Publication Project Project Project
- Atlas Encoding by Randomized Forests for Efficient Label Propagation
  
  Darko Zikic, Ben Glocker, Antonio Criminisi
  
  MICCAI 2013 – 16th Intl Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI Young Scientist Award) | September 2013
  
  MICCAI 2013 – 16th Intl Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI Young Scientist Award)
  
  Publication
- Modality Propagation: Coherent Synthesis of Subject-Specific Scans with Data-Driven Regularization
  
  D. Ye, Darko Zikic, Ben Glocker, Antonio Criminisi, E. Konukoglu
  
  MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2013
  
  MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention
  
  Publication
- Vertebrae Localization in Pathological Spine CT via Dense Classification from Sparse Annotations
  
  Ben Glocker, Darko Zikic, Ender Konukoglu, David R. Haynor, Antonio Criminisi
  
  MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2013
  
  Publication Publication
- GeoF: Geodesic Forests for Learning Coupled Predictors
  
  P. Kontschieder, Pushmeet Kohli, Jamie Shotton, Antonio Criminisi
  
  Computer Vision and Pattern Recognition (CVPR), 2013 IEEE Conference on | June 2013
  
  ISBN: 978-0-7695-4989-7
  
  Publication Publication Project
- Neighbourhood Approximation using Randomized Forests
  
  Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi
  
  Medical Image Analysis (Medical Image Analysis – MICCAI 2013 Best Paper Award) | January 2013
  
  Publication Project
- Context-Sensitive Decision Forests for Object Detection
  
  Peter Kontschieder, Samuel Rota Bulo, Antonio Criminisi, Pushmeet Kohli, Marcello Pelillo, Horst Bischof
  
  NIPS’12 Proceedings of the 25th International Conference on Neural Information Processing Systems | December 2012
  
  Neural Information Processing Systems (NIPS)
  
  Publication Project
- Immediate ROI Search for 3D Medical Images
  
  K. Simonyan, M. Modat, S. Ourselin, A. Criminisi, A. Zisserman, Antonio Criminisi
  
  MICCAI workshop on Medical Content-based Retrieval for Clinical Decision Support (MCBR-CDS) | October 2012
  
  Publication
- Neighbourhood Approximation Forests
  
  Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012
  
  Publication Publication Project
- Joint Classification-Regression Forests for Spatially Structured Multi-Object Segmentation
  
  Ben Glocker, Olivier Pauly, Ender Konukoglu, Antonio Criminisi
  
  ECCV 2012 – 12th European Conference on Computer Vision | October 2012
  
  Publication Publication Project
- Decision Forests for Tissue-specific Segmentation of High-grade Gliomas in Multi-channel MR
  
  Antonio Criminisi, Darko Zikic, Ender Konukoglu, Ben Glocker, Jamie Shotton
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012
  
  Publication Publication Project
- Current-based 4D shape analysis for the mechanical personalization of heart models
  
  L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache
  
  MICCAI workshop on Medical Computer Vision (MCV) | October 2012
  
  MICCAI workshop on Medical Computer Vision (MCV)
  
  Publication
- Context-sensitive Classification Forests for Segmentation of Brain Tumor Tissues
  
  Antonio Criminisi, Darko Zikic, Ben Glocker, Jamie Shotton
  
  MICCAI 2012 Challenge on Multimodal Brain Tumor Segmentation | October 2012
  
  Publication
- Brain tumor cell density estimation from multi-modal MR images based on a synthetic tumor growth model
  
  E. Geremia, B. Menze, M. Prastawa, M.-A. Weber, Antonio Criminisi, N. Ayache
  
  MICCAI workshop on Medical Computer Vision (MCV) | October 2012
  
  Publication Project
- Automatic Localization and Identification of Vertebrae in Arbitrary Field-of-View CT Scans
  
  Ben Glocker, J. Feulner, Antonio Criminisi, D. R. Haynor, Ender Konukoglu
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012
  
  MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention
  
  The pdf is a modified version of the original publication. Typos in Eq. 1 and 3 have been corrected.
  
  Publication Publication Project
- Layered Spatio-Temporal Forests for Left Ventricle Segmentation from 4D Cardiac MRI Data
  
  J. Margeta, E. Geremia, A. Criminisi, N. Ayache, Antonio Criminisi
  
  MICCAI workshop: Statistical Atlases and Computational Models of the Heart (STACOM) | September 2012
  
  Publication Project
- Comparative Analysis of Semantic Localization Accuracies Between Adult and Pediatric DICOM CT Images
  
  Duncan Robertson, Sayan D. Pathak, Antonio Criminisi, Steve White, David Haynor, Oliver Chen, Khan Siddiqui
  
  SPIE Medical Imaging | January 2012
  
  Publication Project
- Linking DICOM Pixel Data with Radiology Reports Using Automatic Semantic Annotation
  
  Sayan D. Pathak, Woojin Kim, Indeera Munasinghe, Antonio Criminisi, Steve White, Khan Siddiqui
  
  SPIE Medical Imaging | January 2012
  
  Publication Project
- Immediate Structured Image Search for Medical Images
  
  Antonio Criminisi, A. Zisserman, K. Simonyan
  
  MICCAI | September 2011
  
  Publication
- Fast Multiple Organs Detection and Localization in Whole-Body MR Dixon Sequences
  
  O. Pauly, B. Glocker, A. Criminisi, N. Navab, D. Mateus, A. Martinez Moller, S. Nekolla, Antonio Criminisi, Ben Glocker
  
  MICCAI 2011 – 14th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2011
  
  Publication Project
- A Discriminative-Generative Model for Detecting Intravenous Contrast in CT Images
  
  Antonio Criminisi, K. Juluru, S. Pathak
  
  MICCAI | September 2011
  
  Publication Project
- Combining Generative and Discriminative Models for Semantic Segmentation of CT Scans via Active learning
  
  A. Montillo, Z. Tu, Antonio Criminisi, J. E. Iglesias, E. Konukoglu, Ender Konukoglu
  
  Information Processing in Medical Imaging (IPMI) | July 2011
  
  Germany
  
  Publication Project
- Entangled Decision Forests and their Application for Semantic Segmentation of CT Images
  
  A. Montillo, J. E. Iglesias, John Winn, Antonio Criminisi, D. Metaxas, Jamie Shotton
  
  Information Processing in Medical Imaging (IPMI) | July 2011
  
  Information Processing in Medical Imaging (IPMI)
  
  Bavaria, Germany
  
  Publication Project
- Exploring the potential for touchless interaction in image-guided interventional radiology
  
  Kenton O'Hara, Abigail Sellen, Antonio Criminisi
  
  Proceedings of CHI 2011 | May 2011
  
  Honourable Mention, Best of CHI Awards
  
  Publication Project Project
- Automatic Semantic Annotation and Validation of Anatomy in DICOM CT Images
  
  S. Pathak, Antonio Criminisi, S. White, I. Munasinghe, B. Sparks, D. Robertson, K. Siddiqui
  
  SPIE Medical Imaging | February 2011
  
  Publication
- Robust Linear Registration of CT Images using Random Regression Forests
  
  Ender Konukoglu, Antonio Criminisi, Sayan Pathak, Duncan Robertson, Steve White, David Haynor, Khan Siddiqui
  
  SPIE Medical Imaging | February 2011
  
  Publication Publication Project
- Mobile Cloud-Computer-aided Diagnosis System for Colon Cancer Screening with Motion-based Virtual Colonoscopic Navigation
  
  H. Yoshida, Y. Wu, W. Cai, J. J. Nappi, M. Hirano, A. Criminisi, Antonio Criminisi
  
  Radiological Society of North America (RSNA) | January 2011
  
  Radiological Society of North America (RSNA)
  
  Publication
- Regression Forests for Efficient Anatomy Detection and Localization in CT Studies
  
  Antonio Criminisi, Jamie Shotton, D. Robertson, Ender Konukoglu
  
  Medical Computer Vision 2010: Recognition Techniques and Applications in Medical Imaging, MICCAI workshop | September 2010
  
  Publication Publication Project
- Anatomy-Driven Medical Image Search
  
  K. Simonyan, A. Zisserman, A. Criminisi, Antonio Criminisi
  
  Radiological Society of North America (RSNA) | January 2010
  
  Publication
- Automatic Semantic Segmentation of Anatomical Structures in CT Scans
  
  Antonio Criminisi, A. Montillo, Jamie Shotton, S. Pathak, John Winn, K. Siddiqui
  
  Radiological Society of North America (RSNA) | January 2010
  
  Publication Project
- Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images
  
  Ezequiel Geremia, Bjoern H. Menze, Oilivierr Clatz, Ender Konukoglu, Antonio Criminisi, Nicholas Ayache
  
  MICCAI | January 2010
  
  Publication Publication Project
- Automatic Semantic Parsing of CT Scans via Multiple Randomized Decision Trees
  
  Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli, Khan Siddiqui
  
  Radiological Society of North America (RSNA) | December 2009
  
  Publication Publication Project Project
- Interactive Geodesic Segmentation of n-Dimensional Medical Images on the Graphics Processor
  
  Antonio Criminisi, Toby Sharp, Khan Siddiqui
  
  Radiological Society of North America (RSNA) | December 2009
  
  Publication Publication
- Random Forest Classification for Automatic Delineation of Myocardium in Real-time 3D Echocardiography
  
  Victor Lempitsky, Michael Veroek, Alison Noble, Andrew Blake
  
  FIMH 2009 [best paper award] | June 2009
  
  best paper award
  
  Publication Project
- Decision Forests with Long-Range Spatial Context for Organ Localization in CT Volumes
  
  Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli
  
  MICCAI workshop on Probabilistic Models for Medical Image Analysis (MICCAI-PMMIA) | January 2009
  
  Publication Publication Project Project
- Discriminative, Semantic Segmentation of Brain Tissue in MR Images
  
  Zhao Yi, Antonio Criminisi, Jamie Shotton, Andrew Blake
  
  MICCAI 2009 | January 2009
  
  MICCAI 2009
  
  Publication Project
- GeoS: Geodesic Image Segmentation
  
  Antonio Criminisi, Toby Sharp, Andrew Blake
  
  Proc. European Conference on Computer Vision (ECCV) | January 2008
  
  ISBN: 978-3-540-88681-5
  
  Publication Publication Publication
- Deep Learning with Mixed Supervision for Brain Tumor Segmentation
  
  Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache
  
  December 2018
  
  Publication
- Generalisability of Image Quality Transfer: Can we approximate in-vivo human brains from dead monkey brains?
  
  Aurobrata Ghosh, V. Wottschel, Enrico Kaden, H. Zhang, Stamatios N. Sotiropoulos, D. Zikic, T. B. Dyrby, Antonio Criminisi, Daniel C. Alexander
  
  April 2016
  
  Publication Project
- Decision Forests, Convolutional Networks and the Models in-Between
  
  Yani Ioannou, Duncan Robertson, D. Zikic, Peter Kontschieder, Jamie Shotton, Matthew Brown, Antonio Criminisi
  
  March 2016
  
  DOI Publication Project
- Infrared depth sensor based automated classification of motor dysfunction in multiple sclerosis – a proof-of-concept study
  
  Burggraaf J, Kamm C, Tewarie P, Peter Kontschieder, Dorn J, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Uitdehaag B, Kappos L
  
  August 2014
  
  Publication Project
- Decision Forests for Computer Vision and Medical Image Analysis
  
  A. Criminisi, J. Shotton, Antonio Criminisi, Jamie Shotton
  
  Published by Springer | February 2013
  
  ISBN: 978-1-4471-4928-6
  
  http://research.microsoft.com/en-us/projects/decisionforests/
  
  Publication Project Project
- Classification Forests for Semantic Segmentation of Brain Lesions in Multi-Channel MRI
  
  E. Geremia, D. Zikic, E. Konukoglu, O.M. Thomas, S.J. Price, T. Das, R. Jena, N. Ayache, A. Criminisi, O. Clatz, B.H. Menze, B. Glocker, J. Shotton, Darko Zikic, Jamie Shotton, Ben Glocker, Antonio Criminisi
  
  Decision Forests for Computer Vision and Medical Image Analysis | Published by Springer | 2013 | Decision Forests for Computer Vision and Medical Image Analysis edition
  
  Publication
- Decision Forests: A Unified Framework for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning
  
  Antonio Criminisi, Jamie Shotton, Ender Konukoglu
  
  Foundations and Trends® in Computer Graphics and Vision | Published by NOW Publishers | 2012, Vol 7 | Foundations and Trends® in Computer Graphics and Vision: Vol. 7: No 2-3, pp 81-227 edition
  
  Publication Project Project
- Decision Forests for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning
  
  Antonio Criminisi, Ender Konukoglu, Jamie Shotton
  
  MSR-TR-2011-114 | October 2011
  
  Publication Project
- Volume Rendering on Server GPUs for Enterprise-Scale Medical Applications
  
  Toby Sharp, D. Robertson, Antonio Criminisi
  
  MSR-TR-2010-72 | June 2010
  
  Publication Access
- Surface Extraction from Binary Volumes with Higher-Order Smoothness
  
  Victor Lempitsky
  
  MSR-TR-2009-31 | March 2009
  
  Publication
- Medical Computer Vision: recognition techniques and applications in medical imaging (1st MICCAI-MCV workshop)
  
  B. Menze, G. Langs, Z. Tu, A. Criminisi, Antonio Criminisi
  
  Published by Springer, February 2011
  
  Workshop held in conjunction with MICCAI 2010, Beijing, China.
  
  Publication

Project InnerEye – Democratizing Medical Imaging AI

Publications

Active label cleaning for improved dataset quality under resource constraints

Machine Learning for Auto-Segmentation in Radiotherapy Planning

Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs

Addressing the Exorbitant Cost of Labeling Medical Images with Active Learning

Secure Medical Image Analysis with CrypTFlow

Evaluation of Deep Learning to Augment Image Guided Radiotherapy for Head and Neck and Prostate Cancers

3D Convolutional Neural Networks for Tumor Segmentation using Long-range 2D Context

Deep Learning with Mixed Supervision for Brain Tumor Segmentation

Autosegmentation of prostate anatomy for radiation treatment planning using deep decision forests of radiomic features

Autofocus Layer for Semantic Segmentation

Semi-Supervised Learning via Compact Latent Space Clustering

Unsupervised domain adaptation in brain lesion segmentation with adversarial networks

Spectral Kernels for Probabilistic Analysis and Clustering of Shapes

Image Quality Transfer and Applications in Diffusion MRI

Sparse Bayesian registration of medical images for self-tuning of parameters and spatially adaptive parametrization of displacements.

Quantifying Registration Uncertainty with Sparse Bayesian Modeling

DeepMedic for Brain Tumor Segmentation

Lifted Auto-Context Forests for Brain Tumour Segmentation

Generalisability of Image Quality Transfer: Can we approximate in-vivo human brains from dead monkey brains?

Decision Forests, Convolutional Networks and the Models in-Between

Assessing Multiple Sclerosis with Kinect: Designing Computer Vision Systems for Real-World Use

Improving Indoor Mobility of the Visually Impaired with Depth-Based Spatial Sound

Spectral Forests: Learning of Surface Data, Application to Cortical Parcellation

Prediction of expanded disability status scale subscores of motor dysfunction in multiple sclerosis using depth-sensing computer vision

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

Video-based paired-comparison ranking: a validation tool for fine-grained measurements of motor dysfunction in multiple sclerosis

Finetuned convolutional neural nets for cardiac MRI acquisition plane recognition

Touchless interaction in surgical settings

Decision Forests for Segmentation of Left Atrium From 3D MRI

Classifier-Based Multi-atlas Label Propagation with Test-Specific Atlas Weighting for Correspondence-Free Scenarios

Quantifying Progression of Multiple Sclerosis via Classification of Depth Videos

Video-based paired-comparison ranking: A validation tool for fine grained measures of motor dysfunction in multiple sclerosis

Infrared depth sensor based automated classification of motor dysfunction in multiple sclerosis – a proof-of-concept study

Encoding Atlases by Randomized Classification Forests for Efficient Multi-Atlas Label Propagation

Assessment of Disability in Multiple Sclerosis Using the Kinect-Camera System: A Proof-of-Concept Study

Image Quality Transfer via Random Forest Regression: Applications in Diffusion MRI

Laplacian Forests: Semantic Image Segmentation by Guided Bagging

Recognizing Cardiac Magnetic Resonance Acquisition Planes

Sparse Bayesian Registration

Real-Time RGB-D Camera Relocalization

Atlas Encoding by Randomized Forests for Efficient Label Propagation

Modality Propagation: Coherent Synthesis of Subject-Specific Scans with Data-Driven Regularization

Vertebrae Localization in Pathological Spine CT via Dense Classification from Sparse Annotations

GeoF: Geodesic Forests for Learning Coupled Predictors

Decision Forests for Computer Vision and Medical Image Analysis

Regression Forests for Efficient Anatomy Detection and Localization in Computed Tomography Scans

Classification Forests for Semantic Segmentation of Brain Lesions in Multi-Channel MRI

Neighbourhood Approximation using Randomized Forests

WESD – Weighted Spectral Distance for Measuring Shape Dissimilarity

Context-Sensitive Decision Forests for Object Detection

Discriminative Segmentation-based Evaluation through Shape Dissimilarity

Automatic Localization and Identification of Vertebrae in Arbitrary Field-of-View CT Scans

Brain tumor cell density estimation from multi-modal MR images based on a synthetic tumor growth model

Context-sensitive Classification Forests for Segmentation of Brain Tumor Tissues

Current-based 4D shape analysis for the mechanical personalization of heart models

Decision Forests for Tissue-specific Segmentation of High-grade Gliomas in Multi-channel MR

Immediate ROI Search for 3D Medical Images

Joint Classification-Regression Forests for Spatially Structured Multi-Object Segmentation

Neighbourhood Approximation Forests

Layered Spatio-Temporal Forests for Left Ventricle Segmentation from 4D Cardiac MRI Data

Comparative Analysis of Semantic Localization Accuracies Between Adult and Pediatric DICOM CT Images

Decision Forests: A Unified Framework for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning

Linking DICOM Pixel Data with Radiology Reports Using Automatic Semantic Annotation

Decision Forests for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning

A Discriminative-Generative Model for Detecting Intravenous Contrast in CT Images

Fast Multiple Organs Detection and Localization in Whole-Body MR Dixon Sequences

Immediate Structured Image Search for Medical Images

Combining Generative and Discriminative Models for Semantic Segmentation of CT Scans via Active learning

Entangled Decision Forests and their Application for Semantic Segmentation of CT Images

Exploring the potential for touchless interaction in image-guided interventional radiology

Automatic Semantic Annotation and Validation of Anatomy in DICOM CT Images

Medical Computer Vision: recognition techniques and applications in medical imaging (1st MICCAI-MCV workshop)

Robust Linear Registration of CT Images using Random Regression Forests

Mobile Cloud-Computer-aided Diagnosis System for Colon Cancer Screening with Motion-based Virtual Colonoscopic Navigation

Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel Magnetic Resonance

Regression Forests for Efficient Anatomy Detection and Localization in CT Studies

Volume Rendering on Server GPUs for Enterprise-Scale Medical Applications

Anatomy-Driven Medical Image Search