Publication BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once Theodore Zhao, Yu Gu, Jianwei Yang, Naoto Usuyama, Ho Hin Lee, Tristan Naumann, Jianfeng Gao, Angela Crabtree, B. Piening, Carlo Bifulco, Mu-Hsin Wei, Hoifung Poon, Sheng Wang June 2024 Video
Publication MedFuzz: Exploring the Robustness of Large Language Models in Medical Question Answering Robert Osazuwa Ness, Hayden Helm, Katie Matton, Sheng Zhang, Junaid Bajwa, Carey E. Priebe, Eric Horvitz June 2024
Publication A whole-slide foundation model for digital pathology from real-world data Hanwen Xu, Naoto Usuyama, Jaspreet Bagga, Sheng Zhang, Rajesh Rao, Tristan Naumann, Cliff Wong, Zelalem Gero, Javier González, Yu Gu, Yanbo Xu, Mu-Hsin Wei, Wenhui Wang, Shuming Ma, Furu Wei, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Jaylen Rosemon, Tucker Bower, Soohee Lee, R. Weerasinghe, Bill Wright, Ari Robicsek, Brian Piening, Carlo Bifulco, Sheng Wang, Hoifung Poon Nature | May 2024
Publication Multimodal Healthcare AI: Identifying and Designing Clinically Relevant Vision-Language Applications for Radiology Nur Yildirim, Hannah Richardson (nee Murfet), Maria T Wetscherek, Junaid Bajwa, Joseph Jacob, Mark A Pinnock, Stephen Harris, Daniel Coelho de Castro, Shruthi Bannur, Stephanie Hyland, Pratik Ghosh, Mercy Ranjit, Kenza Bouzid, Anton Schwaighofer, Fernando Pérez-García, Harshita Sharma, Ozan Oktay, Matthew P Lungren, Javier Alvarez-Valle, Aditya Nori, Anja Thieme CHI 2024 | May 2024 Project
Publication A knockoff calibration method to avoid over-clustering in single-cell RNA-sequencing Alan DenAdel, Michelle L. Ramseier, Andrew W. Navia, Alex K. Shalek, Srivatsan Raghavan, Peter S. Winter, Ava P. Amini, Lorin Crawford bioRxiv | March 2024 Project
Publication Enabling large-scale screening of Barrett’s esophagus using weakly supervised deep learning in histopathology Kenza Bouzid, Harshita Sharma, Sarah Killcoyne, Daniel Coelho de Castro, Anton Schwaighofer, Maximilian Ilse, Valentina Salvatelli, Ozan Oktay, Sumanth Murthy, Lucas Bordeaux, Luiza Moore, Maria O'Donovan, Anja Thieme, Aditya Nori, Marcel Gehrung, Javier Alvarez-Valle Nature Communications | March 2024, Vol 15
Publication Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama (naotous), Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Hassan Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew P Lungren, Serena Yeung-Levy, Curtis P. Langlotz, Sheng Wang, Hoifung Poon March 2024
Publication Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data Chibuikem Nwizu, Madeline Hughes, Michelle L. Ramseier, Andrew W. Navia, Alex K. Shalek, Nicolo Fusi, Srivatsan Raghavan, Peter S. Winter, Ava P. Amini, Lorin Crawford bioRxiv | February 2024 Project
Publication The GA4GH Task Execution Application Programming Interface: Enabling Easy Multicloud Task Execution Alexander Kanitz, Matthew H. McLoughlin, Liam Beckman, Venkat S. Malladi, Kyle Ellrott Computing in Science & Engineering | February 2024, Vol 26: pp. 30-39 Github
Publication Protein structure generation via folding diffusion Kevin E. Wu, Kevin Kaichuang Yang, Rianne van den Berg, Sarah Alamdari, James Zou, Alex Lu, Ava P. Amini Nature Communications | February 2024, Vol 15
